Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001936.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq1129 129 1e-26 seq1694 120 5e-24 seq519 113 8e-22 >seq1129 Length=1508174 Score = 129 bits (142), Expect = 1e-26 Identities = 222/319 (70%), Gaps = 10/319 (3%) Strand=Plus/Minus Query 1714 CTTTGTCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCACAGCACGATTGATG 1773 |||| || |||||||||||||| | | || || || ||||| |||| | |||||||| Sbjct 679408 CTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATG 679349 Query 1774 GGATTCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTT 1833 ||| |||||||||| |||| || || ||||| || || || ||||| | | ||| Sbjct 679348 GGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTT 679290 Query 1834 GGGCCCCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAA 1893 | |||||||||| || ||| | ||||| | ||||| |||| |||| || ||||| | Sbjct 679289 TGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTA 679230 Query 1894 TGACGTTATACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAA---GATGGCCGC 1950 |||| ||||| | | ||||| ||| || |||||||| | |||||||| Sbjct 679229 TGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGT 679170 Query 1951 TCAAGTAATTATGTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTT---CTTGAAC 2007 | | ||||||||| || | | || | ||| | | || ||||| || |||| Sbjct 679169 TAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTG--- 679113 Query 2008 CACCTTCTATGATTATACT 2026 ||||| ||||||||||| Sbjct 679112 GGCCTTCAATGATTATACT 679094 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 176/245 (72%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1723 GGAAATCTTTATAACTGGAC---CCCTCTCCAGGATTGCACAGCACGATTGATGGGATTC 1779 ||||||||||||| |||| || || || ||||| |||| |||||||||| ||| Sbjct 599817 GGAAATCTTTATA---GGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGA 599761 Query 1780 CACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCC 1839 ||| |||||||||||| | || ||||| || || | ||||| || |||| ||| Sbjct 599760 CACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCC 599701 Query 1840 CAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGACGT 1899 |||| ||||| ||| | ||||| | ||||| |||| ||||| | ||||||||| | | Sbjct 599700 CAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCAT 599641 Query 1900 TATACTTG-ACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGATGGCCGCTCAAGTAA 1958 ||| || | | ||||| |||| || ||||||||| || ||||| | |||| Sbjct 599640 TAT-CTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAA 599582 Query 1959 TTATG 1963 ||||| Sbjct 599581 TTATG 599577 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 1716 TTGTCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCACAGCACGATTGATGGG 1775 || || |||||||||||||| | ||||| | ||| ||||| |||||||||||| Sbjct 1742300 TTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGG 1742359 Query 1776 ATTCCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGG 1835 || ||||||||||||| ||| | || | | | || || || ||||| || |||| Sbjct 1742360 ATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGC 1742419 Query 1836 GCCCCAATCAATTCCTTCCAGTG----CTTTAGCTTTAGGTAATGCGGAGCGACGTCATC 1891 ||||||||||||| ||||| || || | ||||| ||| ||||| || ||||| Sbjct 1742420 ACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATC 1742479 Query 1892 AATGACGTTATACTTGACGTCATTTGAGAAAAC 1924 |||||| ||||| | | ||||| |||| || Sbjct 1742480 AATGACATTATATGTTGCATCATTGCAGAATAC 1742512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8319697848800