Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_001938.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq519 140 5e-30 seq1129 136 6e-29 seq1694 134 2e-28 >seq519 Length=3254320 Score = 140 bits (154), Expect = 5e-30 Identities = 177/243 (73%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1621 TCCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAACTCTTTATAGCTGGCACCCT 1680 |||| ||||||||| || |||||| | || |||| ||| ||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1681 CACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGT 1740 ||| ||| ||| | ||||||| |||||| || |||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1741 ACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAATTCTTTCCAGTG----CTTT 1796 |||||||||| |||||||||||| || |||| | |||||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1797 AGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACATCATTCGAGAAG 1856 | ||||| || || || | ||||||||||| ||||| ||||||| |||| Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATATGTTGCATCATTGCAGAAT 1742510 Query 1857 ACT 1859 ||| Sbjct 1742511 ACT 1742513 Score = 105 bits (116), Expect = 1e-19 Identities = 238/347 (69%), Gaps = 8/347 (2%) Strand=Plus/Plus Query 2226 TGCTGGCCTCCTCTGGCAGATCTGCCGTCGATTTGGAAATCTCCCCATTCGATTGTA-TC 2284 |||| | ||| || |||||||| || || ||||| ||||| | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTC 1743191 Query 2285 TCCGTCCTTGTCGATGTATGATTTGACGTCGGAGCTCGATTTAGCTCCCTGAATATTCGG 2344 ||| ||||| |||||||||||||| || | ||| | ||||||| |||| ||| | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2345 ATGGAAATGTGCTGACCGGGTTGGGGAGA-CCAGGTCGAAGAATCTGTTATTCGTGCATT 2403 |||||| || || ||| ||| || | ||| || |||| | ||| ||||| Sbjct 1743252 ATGGAATTG-AATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2404 GGTACTTACCTTCGAACTGAACAAGCACATGGAGATGAGGTTCCCCATTTTCATGAAGCT 2463 | | |||||| ||| || | ||| ||||| | ||| |||||||| || || || | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2464 CTCTGCAAATTTTGATGAATTTCTTGTTGACTGGGGTA-TTTAGGTTTTGTAATTGGGAA 2522 || |||| | | | |||||||| | | | | ||||| || ||| ||| | || | Sbjct 1743371 CTTTGCACACTCTTATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA 1743429 Query 2523 AGTGCTTCTTCTTTAGATAGAGAGCA-CTGGGGATAAGTTAGGAAAT 2568 || || || ||||| | || || || || |||| |||| ||||||| Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAAT 1743475 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 6e-29 Identities = 169/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 1608 GCATTCTTGATAGTCCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAACTCTTTA 1667 ||||| | || ||| | |||||||| | |||||| |||| |||| ||| |||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1668 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGA 1727 |||| ||||| ||||| ||||| || | | ||||| ||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1728 ACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAATTCTTTC 1787 || || || || ||||||||||| |||||||||||| | | |||| | ||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAATCTTTC 679270 Query 1788 CAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATA 1837 | ||||| | ||||| ||| || | | ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 134 bits (148), Expect = 2e-28 Identities = 181/252 (72%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 1608 GCATTCTTGATAGTCCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAACTCTTTA 1667 ||||| | || ||||| |||||||| | |||||| ||| || ||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1668 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGA 1727 ||| ||||| ||||| ||||| || | ||||||| || ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1728 ACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAATTCTTTC 1787 || | || || |||||||||| |||||||||||| || |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1788 CAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACATCA 1847 | ||||| | ||||| ||| || || ||||||||| | |||| | ||||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCA 599627 Query 1848 TTCGAGAAGACT 1859 ||| |||| ||| Sbjct 599626 TTCTAGAATACT 599615 Score = 89.7 bits (98), Expect = 8e-15 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1622 CCAGTTCTTGAGACCTGTATTTTCTGCTTTGTCTAAGAACTCTTTATAGCTGGCACCCTC 1681 ||| ||||| || | |||||| |||| || | ||| ||| | ||| ||||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1682 ACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTA 1741 || ||||||| | ||||||| |||||| || |||||||||| ||| || || || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1742 CTTGCAATTTGATTGCCAA 1760 ||||||||| ||||||| Sbjct 596136 CTTGCAATTACTTTGCCAA 596118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214101683796