Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002046.1 Length=2642 Score E Sequences producing significant alignments: (Bits) Value seq519 154 2e-34 seq1129 141 2e-30 seq1694 129 1e-26 >seq519 Length=3254320 Score = 154 bits (170), Expect = 2e-34 Identities = 167/221 (76%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 1655 TCCAGTTCCTGAGACCTGTATTTTCCTCCTTGTCTAGGAACTCTTTATAGCTGGCACCCT 1714 |||| ||| ||||| || ||||||||| || |||||||| ||||||||| ||||||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1715 CACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGT 1774 ||| ||| ||| | ||||||| |||||| ||||||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1775 ATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTG----CTTT 1830 | |||||||| |||||||||||||| |||| | |||||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1831 AGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1871 | ||||| ||| || || || ||||||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1129 Length=1508174 Score = 141 bits (156), Expect = 2e-30 Identities = 170/230 (74%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 1642 GCATTCTTGATAGTCCAGTTCCTGAGACCTGTATTTTCCTCCTTGTCTAGGAACTCTTTA 1701 ||||| | || ||| | ||| |||| | ||||||||| || |||||||| |||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1702 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGA 1761 |||| ||||| ||||| ||||| || | | ||||| ||||| |||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1762 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTC 1821 || || || || || |||||||| ||||||||||||| | |||| | ||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1822 CAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1871 | ||||| | ||||| || || | || ||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 1642 GCATTCTTGATAGTCCAGTTCCTGAGACCTGTATTTTCCTCCTTGTCTAGGAACTCTTTA 1701 ||||| | || ||||| ||| |||| | ||||||||| | || |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1702 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGA 1761 ||| ||||| ||||| ||||| || | ||||||| || ||| ||| |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1762 ACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTC 1821 || | || || || ||||||| |||||||||||||| |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1822 CAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1870 | ||||| | ||||| || || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 87.8 bits (96), Expect = 3e-14 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1674 ATTTTCCTCCTTGTCTAGGAACTCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCAC 1733 ||||||||| || || | ||| ||| | ||| ||||| |||| ||||||| | || Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1734 GATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTATTTGCAATT 1784 ||||| |||||| ||||||||||||| ||| || || || || |||||||| Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8345296919104