Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002048.1 Length=2584 Score E Sequences producing significant alignments: (Bits) Value seq1694 156 7e-35 seq1129 150 3e-33 seq519 150 3e-33 >seq1694 Length=789422 Score = 156 bits (172), Expect = 7e-35 Identities = 211/292 (72%), Gaps = 4/292 (1%) Strand=Plus/Minus Query 1450 GCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTTTA 1509 ||||| | || ||||| || ||||| | | |||| || |||| || ||||| ||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 ||| | ||| || || ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1570 ACAGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTC 1629 ||| | || || |||||||||| ||||||||||||||| ||||||| | ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1630 CAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCA 1689 | ||||| | ||||| || || || | ||||||||| | |||| | | ||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCA 599627 Query 1690 TTC--GAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATG 1739 ||| ||||| | | ||||||||| |||||||| | ||||||||| Sbjct 599626 TTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 89.7 bits (98), Expect = 8e-15 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1464 CCAGTTTTTGAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTTTATAGCTGGAACCCTC 1523 ||| || || || | | |||| || ||||| || | |||| || | ||| | ||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1524 GCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTTCCGTA 1583 | ||||||| | |||||||||||||| || |||||||||| ||| || || || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1584 CTTGCAATTTGATTGCCAA 1602 ||||||||| ||||||| Sbjct 596136 CTTGCAATTACTTTGCCAA 596118 >seq1129 Length=1508174 Score = 150 bits (166), Expect = 3e-33 Identities = 266/384 (69%), Gaps = 8/384 (2%) Strand=Plus/Minus Query 1450 GCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTTTA 1509 ||||| | || ||| | || ||||| | |||| || ||||| || |||||| ||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1510 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1569 |||| | ||| || || ||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1570 ACAGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTC 1629 || || || || ||||||||||| |||||||||||||| | ||||||| | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1630 CAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCA 1689 | ||||| | ||||| || || | || ||||| ||||| |||||| | ||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATCA 679210 Query 1690 T--TCGAATAGACCCTAGAATTGAAATCAA---GATGACCGCTCAAGTAATTATGTGGGC 1744 | | ||||| | | |||||||| | |||| ||| | | ||||||||| || Sbjct 679209 TTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGT 679152 Query 1745 CTAAGACCCGAGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAATACTAA 1804 | | || ||| | | || || || ||||| ||||||||||| ||||| Sbjct 679151 CGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTT 679092 Query 1805 TAGGTCTTTCCCGGCGCGCAGCGG 1828 ||||||| || | | |||| ||| Sbjct 679091 TAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 150 bits (166), Expect = 3e-33 Identities = 178/238 (75%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 1448 CAGCATTCTTTAGAGTCCAGTTTTTGAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTT 1507 ||||||| | ||| |||| || ||||||| |||| || || || || |||||| ||| Sbjct 1742256 CAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTT 1742315 Query 1508 TATAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTT 1567 ||||| | |||||| | ||| ||| | |||||||||||||| || |||||||||| Sbjct 1742316 TATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTT 1742375 Query 1568 GAACAGGCTTTCCG-TACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCT 1626 ||| | |||||| |||||||||| ||||||||||||||| ||||||| | |||| Sbjct 1742376 AAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCT 1742434 Query 1627 TTCCAGTG----CTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATAT 1680 ||||| || || | ||||| || || || || ||||||||||| |||||| Sbjct 1742435 TTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 Score = 105 bits (116), Expect = 1e-19 Identities = 246/364 (68%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 2073 ACCTCCTCTAGCTGATCGTCCATCGATCTGGAAAATTCCAAAATCAATGAAGTCTCCGTC 2132 || ||| ||||| |||| |||||| || || ||| | |||| | | ||||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2133 TTTTTCCACATAGGTCTTGACGTCTGAAGACGATTTAGCTCTCTGTATGTTCGGATGGAA 2192 ||||| | || | || || | || | ||||||| || | || ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2193 ATGTGCTGACCTGGTTGGG-GATACCAAGTCGAAGAATCGTTGATTGGTGCACTGGTACT 2251 || | ||| | ||| |||| | ||| || |||| |||||||||||| | | | Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATT 1743316 Query 2252 TTCCTTCGAACTGGATGAGAACGTGGAGATGAGGTTGCCCATCTTCGTGTAGTTCTCTTG 2311 | ||| ||| ||||| || || || | ||| |||| ||| | |||||||||| | Sbjct 1743317 TACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGC 1743376 Query 2312 AAACACGAATGAATTTCTTAGA--AGTTGGGGTTTCTAGGTTTTGCAATTGGGAAAGGGC 2369 | || | ||||||| ||||| || ||| | ||| ||| | || ||| || Sbjct 1743377 ACACTCTTATGAATT--TTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGC 1743434 Query 2370 TTCTTCTTTTGTGAGCGAACA-CTGGGGATATGTGAGGAAATAATTCCTGGCATTTATAC 2428 || ||||||||||| ||||| || |||| | |||||||||| ||| || |||||| | Sbjct 1743435 ATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTC 1743493 Query 2429 TAAA 2432 |||| Sbjct 1743494 TAAA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8159703659400