Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002510.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq1129 86.0 1e-13 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 206/309 (67%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 1716 ACCTGGATTGCAGAGGAAGATTGTTGGGATGCCCCCTTTAATTTGAACTGGTTTCCCGTA 1775 ||||||||| || | ||||||| ||||| | ||||||||| |||| |||||||| || Sbjct 679374 ACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATA 679315 Query 1776 TTTTGTGTTGCTTTGCCAGTCCTTTTGTGCCCCCATGAACTCCTTAAAGTGTTTCAGAT- 1834 || || |||||||| || ||||| |||| || || || || | || |||| | Sbjct 679314 CTTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTT 679256 Query 1835 ------AATGCGGGTCAACATCATCTATGACGTTATACCATGCGTCATTACTGAACACCT 1888 | || | || | ||||||||||||| ||||| ||| ||||| ||| || Sbjct 679255 TAAGTAAGTGGGAGTTA-CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTG 679197 Query 1889 TTGGGCTCAGATCAA---GATGACCGCACAGATAATTGTGAGGCCCAAGACTTCTGGCCC 1945 | | | | ||| | |||| ||| | ||||| ||| | | || | |||| Sbjct 679196 ATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCA 679137 Query 1946 ATACGGTCTTTCCTGTTCTGCTTTCCCCTTCAATCACTATACTAATCGGTCTACTTGGCC 2005 | || || ||| ||| ||| |||||||| | |||||| | |||||| ||||| Sbjct 679136 AAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCC 679077 Query 2006 GCGCAGCGG 2014 |||| ||| Sbjct 679076 ACGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732473529730