Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002543.1 Length=3080 Score E Sequences producing significant alignments: (Bits) Value seq1129 127 4e-26 seq519 102 2e-18 seq1694 100 6e-18 >seq1129 Length=1508174 Score = 127 bits (140), Expect = 4e-26 Identities = 149/200 (75%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 2008 CATTTTCAGGCTTGTCTAAAAAATCTCGAAAGCTAGATCCCTCACCAGGATTACAAAGTA 2067 ||||||| || |||| |||||| | ||| | || ||||| |||||||| | || Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 2068 TAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCC 2127 || | |||| ||| ||||| |||| |||||||| || |||||||| ||||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 2128 AGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTCATCTTCAAGTATGTCGGGGCTA 2187 | || |||| |||| || | |||||| ||||||||||||| ||||| || || | || Sbjct 679297 AATCTTTTTGC-CCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 2188 CGTCATCTATGACGTTATAT 2207 | ||||||||||| |||||| Sbjct 679238 CATCATCTATGACATTATAT 679219 >seq519 Length=3254320 Score = 102 bits (112), Expect = 2e-18 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 2008 CATTTTCAGGCTTGTCTAAAAAATCTCGAAAGCTAGATCCCTCACCAGGATTACAAAGTA 2067 ||||||| || |||| |||||| | || | ||||||| ||| || | || Sbjct 1742289 CATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATA 1742348 Query 2068 TAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCC 2127 || | |||| || ||| |||||| ||| |||||| | |||||||| ||||||| Sbjct 1742349 CGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCC 1742408 Query 2128 AGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATG----CTTCATCTTCAAGTATGTCGGG 2183 | || |||| |||| || | ||||||||||| || |||||| |||||||| || Sbjct 1742409 AATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGA 1742468 Query 2184 GCTACGTCATCTATGACGTTATAT 2207 ||||| ||||| ||||| |||||| Sbjct 1742469 GCTACATCATCAATGACATTATAT 1742492 >seq1694 Length=789422 Score = 100 bits (110), Expect = 6e-18 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2046 CCCTCACCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTC 2105 || ||||| |||||||| | || || | | || | | | |||||||||| ||||| Sbjct 599797 CCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTC 599738 Query 2106 CCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTC 2165 || || ||||||| |||||||| || |||| |||| || | |||||| | |||||| Sbjct 599737 CCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTC 599678 Query 2166 ATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTAT 2205 ||||| ||||| || || ||| | ||||| ||| | |||| Sbjct 599677 ATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9743635726650