Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002555.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq519 100 5e-18 seq1694 87.8 3e-14 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 148/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 1658 TTCTCTTCTTTGTCGAGGAAACATTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1717 || || || || || |||||| ||||||| || ||||| | ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1718 ATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCG-TATTTACAGTTTGATTGCCA 1776 || ||||||| ||||||||||||| ||| | |||||| | || || || |||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1777 ATCCCTTTGGGCCCCAATCAATTCTTTCCAGTG----CTTTAACTTTAGATA-GTGCGGT 1831 ||| |||| ||||||||||||||||||| || || | ||||| || ||| || Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGA 1742468 Query 1832 GCGATGTCATCGATGACGTTATAT 1855 || | ||||| ||||| |||||| Sbjct 1742469 GCTACATCATCAATGACATTATAT 1742492 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 1658 TTCTCTTCTTTGTCGAGGAAACATTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1717 || || |||| || ||||| ||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1718 ATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTTGATTGCCAA 1777 || ||| ||| ||| |||||||||||| | || || || || || | ||||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1778 TCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTTTA 1820 || |||| ||||||| ||||||||| | ||||| | ||||| Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTA 599671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8281299243344