Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002817.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq519 93.3 7e-16 seq3069 91.5 3e-15 seq1694 91.5 3e-15 seq2957 84.2 4e-13 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 7e-16 Identities = 160/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 1306 TTCCTGAGGTTGTAGTTGAATCGTATTTGAAGGTGTATGATGTCGTAATTCTTGAAGAAC 1365 |||||||| ||||||||||| |||| || | | ||||||||||| || ||| || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1366 GGTCTTATGTGGTGTTTGGTTATCTTGAAATAAAGCGGATTTGTTATCTCCCAGGTAAAA 1425 |||| | |||| | |||||||||||||| || | ||||| || ||||| | | | Sbjct 1741937 TGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATAT 1741996 Query 1426 ACGCCATTCTGAGCTTGATGCGCAGTGATGTCTTCCCCTGTGCGTAAATCCATGATTTCT 1485 || ||||| | ||| || ||||| | |||||| ||| | |||||||| || || Sbjct 1741997 ACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCT 1742055 Query 1486 GCAGCCGATATGTATGTAGTAGGAACACCCGCAGGCTAAATCTATTCGCTT 1536 ||| || ||| ||| || || || ||| || ||| || ||||| Sbjct 1742056 ACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 Score = 93.3 bits (102), Expect = 7e-16 Identities = 266/400 (67%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 2240 TCCTCTAGCACTTCGTCCGTCGACCTGGAATTCTCCCCATTCAAGTGTGTCTCCATCCTT 2299 ||| ||| || || ||| || | || || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2300 GTCGATGTAGGACTTGACG--TCGGAGCTTGATTTAGCTCCCTGAATGTTTGGATGGAAA 2357 || ||||| || || || || || |||||||||| |||| ||||||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2358 TGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGGTGATTCTTGCAGTTGAATTTT 2417 || | || || ||| | | |||||| || | ||||| ||||| |||||| Sbjct 1749076 TGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2418 CCCTCGAACTGAATAAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAG 2477 || ||||| | | || || | ||| |||| ||| || |||||| |||||||| Sbjct 1749135 CCTGTGAACT-AGAGATTACATGCAAATGTGGTT-CCCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2478 ATTTTGATGTATTTTTTATTGGT-GGGTGTTTCAAGGTTTAATAATTGGGAGAGTGTCTC 2536 | ||| ||| |||| ||| || |||| || |||||| | || || || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTT-GAGGTTTTTGAGATGACGAAGAACATC 1749251 Query 2537 TTCCTTTGTGAGAGAGCATTTTGGATAAGTGACGAAATAGTTTTTGGAATTTATTTGAAA 2596 || |||||||| | ||| |||| |||||| ||||| |||||| ||||||| ||| Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Query 2597 GCGTTTCGGAGGAGCCATTTGGTCAATGGGTACCGATTGA 2636 || |||||||||| |||| | |||||||||| Sbjct 1749312 CATGTTATTGGGAGCCATTT-TTCAAATGTTACCGATTGA 1749350 >seq3069 Length=10854949 Score = 91.5 bits (100), Expect = 3e-15 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 1299 CAATGCCTTCCTGAGGTTGTAGTTGAATCGTATTTGAAGGTGTATGATGTCGTAATTCTT 1358 ||| || |||||||||||| |||||||| |||| || | | ||||||||||| | || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1359 GAAGAACGGTCTTATGTGGTGTTTGGTTATCTTGAAATAAAGCGGATTTGTTATCTCCCA 1418 | || ||||| | |||||| |||| ||||||||| || ||||||| || || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1419 GGTAAAAACGCCATTCTGAGCTTGATGCGCAGTGATGTCTTCCCCTGTGCGTAAATCCAT 1478 || | ||| |||| | | | || ||||| | || ||| ||||| |||| ||| Sbjct 3754521 AATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1304 CCTTCCTGAGGTTGTAGTTGAATCGTATTTGAAGGTGTATGATGTCGTAATTCTTGAAGA 1363 ||| | ||| ||||||||||| ||||||| | | ||| ||||||| || ||| || Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1364 ACGGTCTTATGTGGTGTTTGGTTATCTTGAAATAAAGCGGATTTGTTATCTCCCAGGTAA 1423 | ||| | | | |||| |||||||||||||| || |||||| || ||||| | | Sbjct 596592 ATGGTGTCCTCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCAT 596533 Query 1424 AAACGCCATTCTGAGCTTGATGCGCAGTGATGTCTTCCCCTGTGCGTAAATCCATGATTT 1483 | |||||||| | || | |||||| | |||||| |||| |||||||| || Sbjct 596532 ATACGCCATTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTC 596473 Query 1484 CTGCAGCCGATATGTATGTAGTA 1506 ||||| |||||| ||| || Sbjct 596472 CTGCAATTAATATGTTGGTAATA 596450 Score = 78.8 bits (86), Expect = 2e-11 Identities = 96/131 (73%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1303 GCCTTCCTGAGGTTGTAGTTGAATCGTATTTGAAGGTGTATGATGTCGTAATTCTTGAAG 1362 || ||||||| || ||||||||| ||| | | | |||||||||| || ||| | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1363 AACGGTCTTATGTGGTGTTTGGTTATCTTGAAATAAAGCGGATTTGTTATCTCCCAGGTA 1422 || ||||| | |||||| |||||||||||||| || ||||||| || || || ||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1423 AAAACGCCATT 1433 | ||| |||| Sbjct 600112 TATACGTCATT 600102 >seq2957 Length=4215098 Score = 84.2 bits (92), Expect = 4e-13 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 1300 AATGCCTTCCTGAGGTTGTAGTTGAATCGTATTTGAAGGTGTATGATGTCGTAATTCTTG 1359 || || ||| ||||||||| |||||| |||| || | || |||||||| | || ||| Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1360 AAGAACGGTCTTATGTGGTGTTTGGTTATCTTGAAATAAAGCGGATTTGTTATCTCCCAG 1419 ||| | ||| | |||||| |||||||||||||| | |||||| || ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1420 GTAAAAACGCCATTCTGAGCTTGATGCGCAGTGATGTCTTCCCCTGTGCGTAAATCCAT 1478 ||| | || |||| | ||| |||| ||| || | | | ||||| |||||||| Sbjct 1238869 GTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742073170840