Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002981.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq519 129 1e-26 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 341/509 (67%), Gaps = 14/509 (3%) Strand=Plus/Plus Query 2076 AAAATCCTATCTAAATTTGAATTTAAGTTATGAAATTGTAAAACAAAA-TCTTTGGGAGC 2134 ||||| | | | ||||| ||||| || |||||| |||||| | ||| |||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2135 TTTCTCTTTTAATATATTGAGGGCCTGTGCTTTTGACCCTGAATTGATTGCCTCGGCATA 2194 |||||||||| ||| | | | || |||||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2195 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCC 2254 | | || | ||| || ||| ||||| ||||||||||| | ||| ||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2255 ATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTAACATCA---CTTGAGCTTTT 2311 ||| | | |||||| || || || ||||| | |||||||| | |||| ||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTT 1743233 Query 2312 AGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAGGTA-AGGTCGAAGA 2370 || |||| || ||||||| || | || ||| ||| | || | ||| || | Sbjct 1743234 AGAAAATTGAACATTTTGATGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAA 1743292 Query 2371 ATCTATTG-TTCCTGCACTGGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGA 2429 ||| |||| || |||| |||||| ||| ||| ||||| || |||||||| || || Sbjct 1743293 ATC-ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2430 GTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTAGAAGTTGGGGTTTCG 2489 ||| | ||| || ||| |||| | ||| ||||||||| | || ||| | | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG 1743411 Query 2490 AGATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCA-CTTGGGATAAGTGAG 2548 || || | || ||| || || ||||| || || || || ||||||| ||||||| Sbjct 1743412 AGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAG 1743470 Query 2549 AAAATAATTTTTGGCATTTATTTTAAACC 2577 |||| ||||||| ||||||| |||||| Sbjct 1743471 GAAATGATTTTTGCTATTTATTCTAAACC 1743499 Score = 114 bits (126), Expect = 2e-22 Identities = 350/523 (67%), Gaps = 21/523 (4%) Strand=Plus/Plus Query 2064 ATTGGAGGTGTAAAAATCCTATCTAAATTTGAATTTAAGTTATGAAATTGTAAAACAAAA 2123 ||| |||| | || || | | | ||||| ||||| || |||||| |||||| || ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2124 -TCTTTGGGAGCTTTCTCTTTTAATATATTGAGGGCCTGTGCTTTTGACCCTGAATTGAT 2182 |||||||| |||||||||||| ||| | | || || ||| | |||| || Sbjct 1748861 CTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAATTAAT 1748919 Query 2183 TGCCTCGGCATATGCGTCGTTGGCAG-ATTGGCA-ACCTCCTCTAGCTGATCTTCCATCG 2240 || || || ||| | || || | ||| | || ||| ||| | ||||||||||| Sbjct 1748920 CGCTTCAGCGTATACATC--TGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCA 1748977 Query 2241 ACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTAAC--AT 2298 | ||| ||| | | ||| | |||||| || || || ||||| | |||||| || Sbjct 1748978 ATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCAT 1749037 Query 2299 CAC---TTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGG 2355 || |||| |||||| |||| || |||||||| || | || | ||| Sbjct 1749038 CAAAGGTTGA---TTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT 1749094 Query 2356 AGGTAAGGTCGAAGAATCTATTG-TTCCTGCACTGGAATTTTCCTTCGAACTGGATGAGA 2414 ||| | ||||| || | |||| || |||| |||||| ||| ||||| || || Sbjct 1749095 TTGTATG-TCGAAAAACC-ATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATT 1749151 Query 2415 ACATGCAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTTTTA 2474 |||||||| || || |||| | ||| || |||||||| | | | |||||||| | Sbjct 1749152 ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGA 1749210 Query 2475 GAAGTTGGGGTTTCGAGATTTAATAATTGGGAAAGTGCTTCTTCTTTAGTTAGAGAGCA- 2533 || ||| | ||| ||| | || ||| | || ||||| || || | || Sbjct 1749211 TTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACAT 1749270 Query 2534 CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAAC 2576 ||||||| |||||||||||||||||||| ||||||| ||||| Sbjct 1749271 CTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632