Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_002984.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq519 161 2e-36 seq1129 158 2e-35 seq1694 154 2e-34 >seq519 Length=3254320 Score = 161 bits (178), Expect = 2e-36 Identities = 179/236 (76%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 1494 GCATTTTTGATCGTCCACTCTCTT-AGGCTTTCATTTTCCTCTTTATCGAGGAAATCTTT 1552 ||||||| | | |||| | |||| || | |||||||||| ||||| ||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTT 1742316 Query 1553 ATAAGATGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTG 1612 ||| ||||| ||||| | | ||| ||||| |||||||||||||| || |||||||||| Sbjct 1742317 ATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTA 1742376 Query 1613 AACTGGCTTTCCATATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTT 1672 ||| | || | | | || || || |||||||| |||| |||| ||||||||||| Sbjct 1742377 AACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1673 CCAGTG----CTTTAGCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATAT 1724 ||| || || | ||||| |||| ||||| || ||||||||||| |||||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 Score = 78.8 bits (86), Expect = 2e-11 Identities = 120/166 (72%), Gaps = 5/166 (3%) Strand=Plus/Plus Query 1140 TAATGTCGTCCAGATTTGGAAGTTCAGGAATGCTTTGTGAAGATTTAGTGCTCTCCTGAG 1199 ||||||||||||||| | ||| | |||| || |||| | ||| | | ||||||| Sbjct 1741825 TAATGTCGTCCAGATCTTGAAAAATATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAG 1741884 Query 1200 GTTGTGGTTGAATCTGATCTGGATGTGGA--ATATCCTCGTTGTTGTGTAGATTGGGTCC 1257 |||| |||||| |||||||| | | || || | |||||||| || |||| ||| Sbjct 1741885 ATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCC 1741943 Query 1258 TCTACGTT-GT-ACATCTTGAAATAGAGGGGATTTGGAACGTCCCA 1301 ||| || || |||||||||||||||| |||||| | ||||| Sbjct 1741944 TCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCA 1741989 >seq1129 Length=1508174 Score = 158 bits (174), Expect = 2e-35 Identities = 272/389 (70%), Gaps = 12/389 (3%) Strand=Plus/Minus Query 1494 GCATTTTTGATCGTCCACTCTCTT-AGGCTTTCATTTTCCTCTTTATCGAGGAAATCTTT 1552 ||||||| || |||| | | |||| ||| |||||||||||||||| ||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAAT-TCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTT 679390 Query 1553 ATAAGATGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTG 1612 ||| | || || || |||||||| |||| | ||||||||||| ||||||||| | Sbjct 679389 ATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAG 679330 Query 1613 AACTGGCTTTCCATATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTT 1672 ||| || || ||||| || || || ||||||| | ||| | |||| ||||| ||||| Sbjct 679329 AACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTT 679271 Query 1673 CCAGTGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTC 1732 | | ||||| | ||||| ||| |||| || ||||| ||||| |||||| || || Sbjct 679270 CTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1733 GTTTGAGTAAACCCTAGAATTGAAATCCAGGTGA---CCGCTAAGATAATTGTGCTTGCC 1789 || | | || |||||||| | |||| ||| ||| ||||| || | | Sbjct 679210 ATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTC 679151 Query 1790 TAACGAACGGGACCACATCGTCTTCCCCGTT---CTTGAGTCACCTTCTATGATTATACT 1846 | || |||| | | | || || || || |||| | ||||| ||||||||||| Sbjct 679150 GAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGG---CCTTCAATGATTATACT 679094 Query 1847 TCTAGCTCGCATTGGCCGCGCAGCGGCAT 1875 | ||| || ||||| |||| ||| || Sbjct 679093 TTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq1694 Length=789422 Score = 154 bits (170), Expect = 2e-34 Identities = 214/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 1494 GCATTTTTGATCGTCCACTCTCTT-AGGCTTTCATTTTCCTCTTTATCGAGGAAATCTTT 1552 ||||||| || |||||| | |||| ||| |||||||||||| ||| |||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTT 599808 Query 1553 ATAAGATGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTG 1612 ||| || || || || |||||||| |||| |||||||||| ||| | | ||||||||| Sbjct 599807 ATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTG 599748 Query 1613 AACTGGCTTTCCATATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTT 1672 ||| | || ||||| || || | |||||||| |||| |||| || |||||||| Sbjct 599747 AACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTT 599688 Query 1673 CCAGTGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTC 1732 | | ||||| | ||||| ||| ||||| | ||||||||| | |||| | || || Sbjct 599687 CTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATC 599628 Query 1733 GTTTGAGTAAACCCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCC 1789 || || | || |||||||| ||||||||| | ||||| || || || Sbjct 599627 ATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGATTACC 599571 Score = 107 bits (118), Expect = 3e-20 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1525 CATTTTCCTCTTTATCGAGGAAATCTTTATAAGATGCCCCCTCTCCTGGATTGCACAGCA 1584 |||||||||||||||| | ||||||| | || ||||| || || | | ||||||||| | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1585 CGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCATATTTACAGTT 1636 ||||||||||||| || |||||||||| ||| || || ||||| || || || Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313298081224