Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003357.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq3069 122 2e-24 seq2957 116 6e-23 seq1694 116 6e-23 seq1129 116 6e-23 seq519 113 8e-22 >seq3069 Length=10854949 Score = 122 bits (134), Expect = 2e-24 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1293 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGT 1352 ||| |||||||| |||||| |||||| |||||||||||| |||||||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1353 GTTGAATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTC-C 1411 ||| ||||| ||| ||||| |||| ||||||||| ||||||||| | | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTT-GGTACTTCTC 3754519 Query 1412 AAGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCA 1471 || |||| ||| || | | ||| | || | |||||| || ||| ||||| ||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1472 TGATTTGCGCAGTTTATGCTGAAGTAGTATGAGCACCCGCA 1512 | || ||| || ||| |||||||| ||| || || Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq2957 Length=4215098 Score = 116 bits (128), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 1294 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTG 1353 || |||||| | ||||||| |||||||||||||||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1354 TTGAATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCC-A 1412 ||||||| ||| ||||| ||||||||||||||| || ||||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTT-GGTACTTCCTA 1238867 Query 1413 AGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAGTTCCC--CTGTGCGTGAATCC 1470 ||||| || || | | ||| |||| ||| |||| ||| || | ||||| ||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAG--GTTTCCATCAGTGCGAAAATCC 1238925 Query 1471 ATGATTTGCGCAGTTTATGCTGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1522 || || |||| ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238926 ATTGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 116 bits (128), Expect = 6e-23 Identities = 153/209 (73%), Gaps = 10/209 (5%) Strand=Plus/Minus Query 1309 TTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGG---CCTC 1365 |||| |||||||||||| |||||| ||| |||||||||||| |||||||||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1366 TCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATACACGCCA 1425 | ||| | ||||||||||||||||| ||||| | ||||| ||| |||||| Sbjct 596581 TAGTGTCGT---GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1426 CTCTCGCATTGAGTTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCATGATTTGCGCAGTT 1485 | | ||| ||| ||||||| ||||||| |||| ||||||| || ||| || Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1486 --TATGCTGAAGTAGTATGAGCACCCGCA 1512 |||| || ||| |||| ||| || || Sbjct 596464 AATATGTTG--GTAATATGTGCAACCACA 596438 Score = 111 bits (122), Expect = 3e-21 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 1297 GCTTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTGTTG 1356 |||||||| | || || |||||||| ||||| |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1357 AATGGCCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTC-CAAGT 1415 ||||| ||| ||||| |||||||||||||||||||||||| | | || ||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT-GGTACTTCTCAAGT 600114 Query 1416 ATACACGCCA 1425 ||| ||| || Sbjct 600113 ATATACGTCA 600104 >seq1129 Length=1508174 Score = 116 bits (128), Expect = 6e-23 Identities = 133/175 (76%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1299 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1358 |||||| | ||||| ||||||||||||||||||| |||||||| |||| || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1359 TGGCCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGT-CCAAGTAT 1417 || ||| ||||| | ||||||||| ||||| ||| ||| | | | | |||||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT--TAAACTTCCCAAGTAT 693658 Query 1418 ACACGCCACTCTCGCATTGAGTTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCAT 1472 | |||||| | | || | ||| ||| |||| | | ||| || || ||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAG-ATATTCCCGGTACGAAAATCCAT 693604 Score = 77.0 bits (84), Expect = 6e-11 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1299 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1358 |||| | | ||||| |||||||||||| |||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1359 TGGCCTC 1365 ||| ||| Sbjct 679697 TGGTCTC 679691 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 130/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1299 TTTCCTCAGGTTGTGGTTGAACTGTATCTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1358 |||||| || |||| |||||| ||||||||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1359 TGGCCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAAGTATA 1418 | | ||| |||| ||||||||||||||||||| |||| | ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1419 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCAT 1472 || ||| | | ||| |||| |||||| ||||||| ||| | ||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649285878964