Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003434.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq519 136 7e-29 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 332/493 (67%), Gaps = 9/493 (2%) Strand=Plus/Plus Query 2092 AAATTAGAATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTCTCCTTTATT 2151 ||||||||||| |||||||||||||| | ||| || | | |||| |||||| |||||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2152 ATAGCCATTGCAGCTTCTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCATCATTAGCT 2211 || | ||| || ||| | | | ||| | ||||| || |||| | || Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGGTGCATAATTAATCGCTTCAGCGTATACATCTGCAACT 1748944 Query 2212 GTCTGTTGACCTCCTCGTGCAGATCTCCCATCGATCTGGAACTCTCCCCATTCGAGGGTG 2271 | | | || ||| | ||||||| ||||| || || || || |||| || | | Sbjct 1748945 ATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAG 1749004 Query 2272 TCTCCGTCCTTGTCGATGTAGGACTTGACG--TCGGTGCTGGATTTAGCTCCCTGAATGT 2329 ||||| ||||| || ||||| || || || || | | |||||||| |||| | Sbjct 1749005 TCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACAT 1749064 Query 2330 TCGGATGGAAATGTGCTGACCTGTTTGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGC 2389 | |||||||| || | || || ||| | |||||| || | |||||| ||| Sbjct 1749065 TTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTGGTGC 1749123 Query 2390 A-CTGATATTTCCCTTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGT 2448 | | || |||||||| ||||| || || ||||| | ||| || |||| | |||| Sbjct 1749124 AGCAGA-ATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTTGCTGTGT 1749180 Query 2449 AGTTCTCTGCAGATCTTGATGTATTTTTTGTTTGTTGGGGGTTGGAGATTTAATAATTGG 2508 ||||||||||| | || ||| |||| ||||| ||| | ||| ||| | || Sbjct 1749181 AGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGA 1749240 Query 2509 GAAAGTGCCTCTTCTTTAGTAAGGGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGC 2567 ||| | || ||||| || || | || ||||||| |||||||||||||||||||| Sbjct 1749241 CGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCT 1749299 Query 2568 ATTTATTTTTAAC 2580 ||||||| | ||| Sbjct 1749300 ATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678084833056