Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003504.1 Length=2603 Score E Sequences producing significant alignments: (Bits) Value seq1129 156 7e-35 seq519 149 1e-32 seq1694 141 2e-30 >seq1129 Length=1508174 Score = 156 bits (172), Expect = 7e-35 Identities = 177/236 (75%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1459 AATTTAGCATTTTGGATTGTCCAATTTTTAAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1518 |||| |||||||||| ||| |||| || || | | ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1519 TCTTTATAACTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTA 1578 |||||||| | || || || |||||||| |||| | ||||||||| | |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1579 ATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAATCAAT 1638 ||| |||| || || ||||| ||||| || |||||| ||| ||| | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAA 679276 Query 1639 TCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGACTGATGTCATCGATGACGTTATA 1694 |||||| | ||||| | ||||| ||| ||| | | ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 149 bits (164), Expect = 1e-32 Identities = 177/240 (74%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 1459 AATTTAGCATTTTGGATTGTCCAATTTTTAAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1518 |||| ||||||||| | ||||||| || || | | | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1519 TCTTTATAACTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTA 1578 |||||||| || ||||| | | ||| ||||| ||||||||||| || || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1579 ATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAATCAAT 1638 |||| ||| | || | | | ||||| || |||||| ||| |||| ||||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1639 TCTTTCCAGTG----CTTTAGCTTTAGGTATTGCGGACTGATGTCATCGATGACGTTATA 1694 |||||||| || || | ||||| |||| ||| | ||||| ||||| ||||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 141 bits (156), Expect = 2e-30 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1459 AATTTAGCATTTTGGATTGTCCAATTTTTAAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1518 |||| |||||||||| |||||||| || || | | |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1519 TCTTTATAACTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTTA 1578 |||||||| || || || |||||||| |||| |||||||||| || | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1579 ATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCAGTCTCTTTGGGCCCCAATCAAT 1638 |||||||| | || ||||| ||||| | |||||| ||| |||| ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1639 TCTTTCCAGTGCTTTAGCTTTAGGTA 1664 |||||| | ||||| | ||||| ||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTA 599667 Score = 107 bits (118), Expect = 3e-20 Identities = 120/159 (75%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1459 AATTTA-GCATTTTGGATTGTCCAATTTTTAAGCGATGCGTTTTCCTCTTTGTCGAGGAA 1517 |||||| |||| ||||| || |||||| || || | | ||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1518 ATCTTTATAACTGGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTTT 1577 |||| | || || || || | | ||||||||| ||||||||||| || || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1578 AATTTGAACCGGCTTTCCATATTTGCAGTTGGATTGCCA 1616 ||||| ||| || || ||||| ||||| || |||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8220501451372