Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003556.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq519 96.9 6e-17 seq2957 84.2 4e-13 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 352/536 (66%), Gaps = 15/536 (3%) Strand=Plus/Plus Query 2221 ACAAACAAAAACCTCCAATG-GAGGAGCAAAAATCCTATCTAAATTTGAATTTAAATTAT 2279 |||||||| | || ||| || | || ||||| | | | ||||| ||||| ||||||| Sbjct 1742969 ACAAACAATATACTTGAATTTGAAGGGCGAAAATTCGACCCAAATTGGAATTGAAATTAT 1743028 Query 2280 GAAATTGTAAAACAAAA-TCTTTGGGAGCTTTCTCCCTTAATATATTGAGTGCCGATGAC 2338 || |||||| | ||| |||||||| | ||||| ||| ||| | | || || Sbjct 1743029 GATATTGTAGAGTGAAACTCTTTGGGT-CATTCTCTTTTATTATTTGTAATGTTGAATCT 1743087 Query 2339 TTTGATCCTGAGTTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCCCTA 2398 |||| | || || || || | | ||| | || | ||| || ||||||| Sbjct 1743088 CTTGACCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCCCCTA 1743147 Query 2399 GCTGATCTTCCATCGACTTGGAAAACTCCAAAATCAAGGATGTCTCCGTCTTTCTCCATG 2458 || ||||||||||| | ||| ||| | | |||| | | |||||| || || || ||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2459 TAGGACTTGACATCTGACGAGCTTTTAGCCGCCTGAATGTTCGGATGGAAATGTGCTGAC 2518 || || || |||| || | ||||| |||| || ||||||| || | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2519 CTACTTGGG-GATACGAGGTCGAAGAATCGTTGATTTTTGCATTGGTATTTTCCTTCGAA 2577 || | ||| |||| | ||| || |||| |||||| |||| | |||| ||| ||| Sbjct 1743268 CTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2578 TTGGATGAGGATGTGGAGATGAGGGCTCCCATCTTCATGTAATTCACGGCAGATTCTTAT 2637 ||||| || | || | ||| || ||| | |||| ||| ||| | |||||| Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTAT 1743386 Query 2638 GAAtttt---tttGATATCGGTGTTTGGAGTTGCTTGATTTG-TGAGAGTGCTTCTCCTT 2693 ||||||| |||| || | ||| ||| |||| || ||| || || || ||| Sbjct 1743387 GAATTTTAGATTTG-TAGGGTAGTT--GAGGCTTTTGAGATGATGA-AGAGCATCATCTT 1743442 Query 2694 TAGTAAGAGAGCAGTGTGGGTATGTGAGGAAATAATTCTTTGC-ATTTATTTTAAA 2748 | || || || || |||| | |||||||||| ||| ||||| ||||||| |||| Sbjct 1743443 TTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATT-TTTGCTATTTATTCTAAA 1743497 >seq2957 Length=4215098 Score = 84.2 bits (92), Expect = 4e-13 Identities = 156/223 (70%), Gaps = 7/223 (3%) Strand=Plus/Plus Query 1462 TGAGGTTGTGGTTGAACTGTATCTGTATTGTTATTACGTCTTGGTCCCTGTTGAATGATC 1521 ||||||||| ||||||||||||||| || ||| | || | | |||||||||||| Sbjct 1238759 TGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAATGATC 1238818 Query 1522 GTTGATTGTGCCTCGTAATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCTC 1581 | ||| | || |||||||||||| || ||||||| || | || |||| || Sbjct 1238819 TCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACTT 1238878 Query 1582 CATTCTGTGC-CTGAGCTGCAGTGATGAGTATCC--CTGTGCGTGAATCCATAGTTTGCA 1638 |||| | ||| |||||| ||| ||| || ||| | ||||| ||||||| ||| | Sbjct 1238879 CATTGT-TGCACTGAGCCGCAATGA--GGTTTCCATCAGTGCGAAAATCCATTGTTCATA 1238935 Query 1639 CAGTCAA-GTCCCACGAAGATAGAACACCCGCAGTTTAGATCA 1680 ||| || || | | || || | || || || ||||||||| Sbjct 1238936 TAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8738873290470