Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003664.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq1694 120 5e-24 seq519 118 2e-23 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 183/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1515 TTTTCCTGTTTGTTTAGGAAACATTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1574 ||||||| || | ||||| ||||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1575 ATGCATGGGATACCACCTTTAATTTGAACCGGCTTTCCGTACTTGCAGTTTGATTGCCAA 1634 || ||| ||| ||| |||||||||||| | || || |||||||| | ||||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1635 TCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGTTTTAGATAATGCGGTGCGACA 1694 || |||| ||||||| ||||||||| | ||||| | |||| ||| || || || Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCA 599654 Query 1695 TCATCAATGACGTTATACTGCACATCGTTTGAGTAGAC--CTTTGAATTGAAATCGAGGT 1752 ||||||||| | |||| | |||| || || | || |||| |||||||| || Sbjct 599653 TCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTG--TTGAAATCATAGT 599596 Query 1753 GACCACTCAAGTAATTATG 1771 |||| || | ||||||||| Sbjct 599595 GACCGCTTATGTAATTATG 599577 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1515 TTTTCCTGTTTGTTTAGGAAACATTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACG 1574 ||||||| || | ||||||| ||||||| || ||||| | ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1575 ATGCATGGGATACCACCTTTAATTTGAACCGGCTTTCCG-TACTTGCAGTTTGATTGCCA 1633 || ||||||| ||||||||||||| || || |||||| ||||||| || |||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTT-AAACGAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1634 ATCCCTTTGGGCCCCAATCAATTCTTTCCAGTG----CTTTAGTTTTAGATAATGCGGTG 1689 ||| |||| ||||||||||||||||||| || || | |||| || || | Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG 1742469 Query 1690 CGACATCATCAATGACGTTATA 1711 | |||||||||||||| ||||| Sbjct 1742470 CTACATCATCAATGACATTATA 1742491 Score = 78.8 bits (86), Expect = 2e-11 Identities = 177/261 (68%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 2099 TTGCTGACCTCCTCTTGCTGATCTTCCATCGATCTGGAAAACTCCATGATCAACGAAGTC 2158 ||||| || ||| || || ||||||||||| || || ||| | | ||| ||| |||| Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTC 1743191 Query 2159 TCCGTCTTTCTCCACGTATGATTTGACGTCTGAGGAGCTCTTAGCTCCCTGAATGTTCGG 2218 ||| || || || | ||||||||| || | |||| |||| |||| || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2219 ATGGAAATGTGCTGACCTGGTTGGG-GATACGAGGTCGAAGAACTTGTTG-TTCTTGCAG 2276 |||||| || | ||| | ||| |||| | ||| || || | ||| || |||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTC-AAAAAATCATTGATTGGTGCAA 1743309 Query 2277 TTGTATTTACCTTCGAACTGGATGAGCACGTGGAGATGAGGTTCCCCATTTTCGTGTAGT 2336 | |||||||| ||| ||||| || || || | ||| |||||||| || ||||||| Sbjct 1743310 CAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2337 TCTCTTGATACACGAATGAAT 2357 ||| | | || | |||||| Sbjct 1743370 TCTTTGCACACTCTTATGAAT 1743390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8281299243344