Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003722.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq519 107 3e-20 seq1694 87.8 3e-14 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 333/507 (66%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 2081 aaaaTCCTATCTAAATTAGAATTTAAATTATGAAACTGTA-ATACAAAATCTTTAGGGGC 2139 ||||| | | | ||||| ||||| ||||||||| | |||| | ||| ||||| ||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTT-GGGTC 1743056 Query 2140 CTTTTCCCTTAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATA 2199 || || ||| ||| | | | ||| || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2200 TGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAA--ATT 2257 | | || | ||| || ||| ||||| ||||||||||| || || ||| || Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2258 CCATGATCAAGGACGTCTCCGTCTTTTTCCATGTATGTTTTAACAT---CTGTTGAGCTT 2314 || ||| | | |||||| || ||||| ||||||| |||||||| ||||| | Sbjct 1743177 TCA--ATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---T 1743231 Query 2315 TTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGG-GATGTGAGATCGAA 2373 |||| |||| || ||||||| || | || | | ||| ||| | | || || Sbjct 1743232 TTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAA 1743290 Query 2374 GAATCTTTGGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGG 2433 |||| ||| || | || |||||| ||| ||| ||||| || ||||||| || || Sbjct 1743291 AAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGG 1743350 Query 2434 AGTCCCATCTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTGGTGTTTC 2493 ||| | || ||||| |||| | ||| |||||| | ||| | || | Sbjct 1743351 TTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTT 1743410 Query 2494 TAGGGCTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAG 2553 ||| ||| | || ||| || || ||||| ||||| ||||| |||| | ||||| Sbjct 1743411 GAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAG 1743470 Query 2554 GAAATAGTTCTTGGCATTTATTCTGAA 2580 ||||| || ||| ||||||||| || Sbjct 1743471 GAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 89.7 bits (98), Expect = 9e-15 Identities = 160/233 (69%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 1621 CCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGG 1680 |||||| || |||||| ||||| ||| | ||| | ||| ||||||||| | Sbjct 1742272 CCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTC 1742331 Query 1681 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1740 | | ||| ||| | | ||| | || || || |||||||||| ||| | |||| | Sbjct 1742332 ACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAA 1742391 Query 1741 CTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------- 1793 |||| ||| |||||||| ||| |||| |||| || |||||||| | |||| Sbjct 1742392 CTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACA 1742451 Query 1794 ---TTAGGTA-GTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATT 1842 ||| ||| ||| ||| |||| ||||||||||| ||||| |||||||| Sbjct 1742452 TCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATATGTTGCATCATT 1742503 Score = 87.8 bits (96), Expect = 3e-14 Identities = 344/521 (66%), Gaps = 29/521 (6%) Strand=Plus/Plus Query 2093 AAATTAGAATTTAAATTATGAAACTGTA-ATACAAAATCTTTAGGGGCCTTTTCCCTTAG 2151 ||||||||||| ||||||||| | |||| | ||| ||||| ||| | || || ||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTT-GGGTCTTTCTCTTTTAT 1748883 Query 2152 TATATTGAGGGCCGAAGCT-TTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGG 2210 ||| | | || | | || |||| | | |||| || || || || ||| | || || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATC--TGC 1748940 Query 2211 CA-GATTGGC-AACCTCCTCTAGCCGATCTTCCATCGATCTGGAAA--ATTCCATGATCA 2266 | ||| | || ||| ||| | ||||||||||| || || ||| || ||| ||| Sbjct 1748941 AACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCT 1748998 Query 2267 AGGACGTCTCCGTCTTTTTCCATGTATGTTTTAA--CATC---TGTTGAGCTTTTAGCTC 2321 | |||||| || ||||| ||||||| ||||| |||| ||||| |||||| Sbjct 1748999 ACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCAT 1749055 Query 2322 CCTGAATGTTCGGATGGAAATGTGCTGATCGGGTTGGGGATGTGAGATCGAAGAATCTTT 2381 |||| || |||||||| || | || | ||| ||| | ||||| || | || Sbjct 1749056 ATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATT 1749114 Query 2382 GGTTTTTACACTGGAATTTTCCTTCGAATTGGATGAGGACATGCAGGTGAGGAGTCCCAT 2441 | || | || |||||| ||| ||| | || || ||||||| || || |||| | Sbjct 1749115 GATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGT 1749172 Query 2442 CTTCATGGAGTTCCCTGCAGATTCTGATGAATAATTTATTAATTG--GTGT-TTCTAGGG 2498 || ||||| ||||| | | | ||| |||||| | ||| | || | ||| Sbjct 1749173 TGCTGTGTAGTTCTCTGCACACTTTTATG---AATTTAAGATTTGTAGGGTAGTTGAGGT 1749229 Query 2499 CTTTAATTTGGGAAAGTGCCTCTTCTTTAGTGAGAGAACAATGTGGGTATGTGAGGAAAT 2558 ||| | || ||| | || ||||| ||||| |||| |||| | ||||| |||| Sbjct 1749230 TTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAAT 1749289 Query 2559 AGTTCTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATT 2599 | || ||| ||||||||| || | ||| ||||||||| Sbjct 1749290 AATTTTTGCTATTTATTCTAAACATGTTATTGGGAGCCATT 1749330 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 1621 CCAATTTTTAAGAGCTGTATTTTTCTCTTCATCCAAGAATTCTTTATAGCTAGAGTTGGG 1680 |||||| || || || ||||| |||||||||| ||| ||||||||| | Sbjct 599852 CCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTC 599793 Query 1681 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTA 1740 |||||||| || | | ||| | | || | | |||||||||||| | ||||| || Sbjct 599792 ACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATA 599733 Query 1741 CTTGGTATTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTG------CTT 1794 |||| || |||||||| ||| |||| |||| || |||||||| | || ||| Sbjct 599732 CTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTT 599673 Query 1795 TAGGT-AGTGCGGATCTACGTCATCAATGACGTTATACCAAGCATCATT 1842 || || |||| ||| || | ||||||||| | |||| |||||||| Sbjct 599672 TAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATCATT 599625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668485181692