Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003803.1 Length=2800 Score E Sequences producing significant alignments: (Bits) Value seq1694 91.5 3e-15 seq3069 86.0 1e-13 seq519 86.0 1e-13 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 140/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 1337 CCTTCCTGATGTTGTGGTTGAACCGTATCTGGAGGGTGATGATGTCGTGGTTCATGTTCC 1396 ||| | |||| |||| ||||||| |||| |||| || ||||||||||| |||| Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1397 CTGG---CCGCTTGTCGTGGTTGGTGATGTCGAAATAGAGGGGATTTGTTATTTCCCAGG 1453 ||| || || || || || || || | ||||||||| |||||| || |||||| | Sbjct 596592 ATGGTGTCCTCTAGT-GTCGT--GTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAG 596536 Query 1454 TAAAAACGCCATTCTTTGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGG 1513 | | |||||||| || ||| | |||||| ||||||| |||| | ||||||| | Sbjct 596535 CATATACGCCATTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCG 596476 Query 1514 TTGATGCAGTCGATATG 1530 || |||| | ||||| Sbjct 596475 TTCCTGCAATTAATATG 596459 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 167/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 1275 AGTCGGAGGCCGTAAGGTCGTCCAGACCTTGAAGTTGAGAAAACACTTGTGAATCCCCAA 1334 ||||| ||| ||| |||||||||| |||||| | | ||| |||| ||| Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAA 3754403 Query 1335 TGCCTTCCTGATGTTGTGGTTGAACCGTATCTGGAGGGTGATGATGTCGTGGTTCATGTT 1394 || ||||||| |||| |||||| ||||||||| ||||||||||||| |||| Sbjct 3754404 GGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTT 3754463 Query 1395 CCCTGGCCGCTTGTCGTGGTTGGTGATGTCGAAATAGAGGGGATTTGTTATTTCCCAGGT 1454 ||| | | | | ||| || | | |||||| |||||||||| || ||| || | Sbjct 3754464 AAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAAT 3754523 Query 1455 AAAAACGCCATTCTTTGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGT 1514 | | ||| |||| || | || || ||||| || ||| |||||| ||| ||| || Sbjct 3754524 ATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGT 3754583 Query 1515 TGATGCA 1521 | |||| Sbjct 3754584 TCTTGCA 3754590 >seq519 Length=3254320 Score = 86.0 bits (94), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 1339 TTCCTGATGTTGTGGTTGAACCGTATCTGGAGGGTGATGATGTCGTGGTTCATGTTCCCT 1398 ||||||| |||| |||||| ||||||||| |||||||||||||| |||| | Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1399 GGCCGCTTGTCGTGGTTGGTG--ATGTCGAAATAGAGGGGATTTGTTATTTCCCAGGTAA 1456 | | | | | || || ||| || | ||||||||||| ||||| || |||||| | | Sbjct 1741937 TGTCTCCTCTGGT--TTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1457 AAACGCCATTCTTTGCTTGAGGCGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGGTTG 1516 | || ||||| || ||| || ||||| ||||||| ||| || ||||||| ||| Sbjct 1741995 ATACACCATTGTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1517 ATGCAGT 1523 | |||| Sbjct 1742054 CTACAGT 1742060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8847669223050