Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003825.1 Length=2861 Score E Sequences producing significant alignments: (Bits) Value seq519 125 1e-25 seq1694 95.1 2e-16 >seq519 Length=3254320 Score = 125 bits (138), Expect = 1e-25 Identities = 245/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 2374 TGCTGGCCTCCTCTAGCAGATCTAGCGTCAATCTGGAATTCTCCCCATTCGATAGTGTCT 2433 |||| | ||| ||||||||||| | ||||| || || || | || || | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2434 CCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGA 2493 || ||||| |||| ||| || || || | ||| | ||||||| || | || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2494 TGGAAATGTGTTGACCTGGTTGGG-GATACCAGGTCGAAGAATCGTTGATTTTTGCAGTT 2552 ||||| || | | ||| | ||| |||| | ||| || |||| |||||| |||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2553 GAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTTTCGTGTAGCTC 2612 |||||| ||| ||| || ||||| ||||| | ||| |||||||| || |||||| || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2613 TCTAGCTACTTTTATGTATTTTTTATTTGT-TGGTGTTTGTAGCCTTTGAAGTTGGTCGA 2671 | | ||| ||||| ||||| |||||| ||| ||| || |||| || || | | Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATGAA 1743430 Query 2672 GAGCTTCTTCTTTGGATAAAGAACA-ATTGGGATATGTGAGGAAATAGTTCTTG 2724 |||| || ||||| | | ||||| |||||| | |||||||||| || ||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 Score = 107 bits (118), Expect = 3e-20 Identities = 196/284 (69%), Gaps = 6/284 (2%) Strand=Plus/Plus Query 1750 AATACAGCATTATAGAGTGTCCAATCTTTTAAAGCCTCATTCTCTTCCTTATCGAGGAAG 1809 ||| ||||||| | || |||||| || | ||| |||| || || ||||| ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1810 TCTTGGAAAGAGGTGTCCCCACCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTA 1869 |||| | || | || ||| | | ||| | || ||||||||||||||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1870 ATTTGAACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGC 1929 |||| ||| | || | | | || || || ||||| ||| | || ||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1930 TCTTTCCAGTG----CTTTAACTTTAAATA-GTGCGGTGTGACGTCATCAATGACGTTAT 1984 |||||||| || || | |||||| || ||| || | || ||||||||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTAT 1742490 Query 1985 ACAAGGCACTATTTGAATACACTCTGCTGTTAAAATCTAAGTGG 2028 | ||| ||| | | ||| |||| |||||||||||| Sbjct 1742491 ATGTTGCATCATTGCAGAATACTGATTTGTTGAAATCTAAGTGG 1742534 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 197/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 1756 GCATTATAGAGTGTCCAATCTTTTAAAGCCTCATTCTCTTCCTTATCGAGGAAGTCTTGG 1815 ||||| | ||| ||||||| || | ||| |||| || || | ||| |||| |||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1816 AAAGAGGTGTCCCCACCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGA 1875 | || | | |||| || || || | || ||||||| |||| ||| |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1876 ACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTC 1935 || | || ||||| || || | ||||| ||| | || ||||||| | |||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1936 CAGTGCTTTAACTTTAAAT-AGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACT 1994 | ||||| | |||||| | |||| || | | ||||||||| | |||| ||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATC 599628 Query 1995 ATTTGAATACACTCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATG 2045 ||| | | ||| |||| ||||| |||| ||| || |||||||| Sbjct 599627 ATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9042861925620