Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003828.1 Length=2773 Score E Sequences producing significant alignments: (Bits) Value seq519 123 4e-25 seq1129 89.7 9e-15 seq1694 78.8 2e-11 seq2957 77.0 6e-11 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 239/345 (69%), Gaps = 6/345 (2%) Strand=Plus/Plus Query 2243 TCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTT 2302 |||||||||||||| ||| || || || ||| | | || || | ||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2303 GTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2362 ||||| || || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2363 TGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTTC 2421 | ||| | ||| |||| | ||| || |||| ||||||||| ||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2422 CTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAAA 2481 || ||| ||||| || | ||| | ||| |||||||| || ||||||||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2482 TTTTGATGAATAATTTGTTTGT-GGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATTT 2540 | | |||||| | ||||| |||| ||| ||| || | | || ||| |||| Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2541 TCTTTTGTTAAATCACAT-TTGGGATATGTAAGGAAATAATTTTT 2584 |||||||| | |||| |||||| | || ||||||| |||||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTT 1743482 Score = 96.9 bits (106), Expect = 6e-17 Identities = 235/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Plus Query 2243 TCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAACATCTCCGTCCTT 2302 ||||||| |||||| ||| || || || ||| | |||| || | | ||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2303 GTCGATATAGGACTTGACG--TCGGAGCTCGATTTAGCTCCCTGAATGTTCGGATGGAAA 2360 || || || || || || || || | |||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2361 TGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTACAATTGTATTTT 2420 || | || || ||| | | |||||| || | ||||||||| || | |||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2421 CCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTAGTTCTCTGCAA 2480 ||| ||| | || || | ||| | ||| ||||||| | | |||||||||||||| Sbjct 1749135 CCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCAC 1749192 Query 2481 ATTTTGATGAATAATTTGTTTGT-GGGTGTTTGTAGGTTTGTTATTTGGGAAAGTGCATT 2539 | ||| |||||| ||||| |||| ||| |||||| | | || ||| ||| Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATC 1749251 Query 2540 TTCTTTTGTTAAATCACAT-TTGGGATATGTAAGGAAATAATTTTT 2584 |||||||| | |||| |||||| | || || ||||||||||| Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTT 1749296 >seq1129 Length=1508174 Score = 89.7 bits (98), Expect = 9e-15 Identities = 209/311 (67%), Gaps = 12/311 (4%) Strand=Plus/Minus Query 1701 CCTGGATTGCATAGGAAGATAGTGGGAATGCCTCCTTTAATTTGAATGGGCTTGCCATAC 1760 |||||||| || | ||||| | || | | ||||||||| ||| ||| || |||||| Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1761 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATAAATTCTTTAAAGTG------TTTT 1814 || || |||||||||||| ||| | |||| || || ||||| | || ||| Sbjct 679313 TTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1815 AAATAA-TGCGGGTCGACGTCATCAATGACGTTATACCAAGCATTATTGCTGTATACTTT 1873 || ||| || | || || ||||| ||||| ||||| |||| |||| | ||||| Sbjct 679254 AAGTAAGTGGGAGT-TACATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGA 679196 Query 1874 TTGACTGAGGTCAA---GATGGCCGCACAAATAATTATGTGGGCCTAATGAACGGGCCCA 1930 || ||| || | |||||||| | |||||||| || | | ||| |||||| | Sbjct 679195 TTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAA 679136 Query 1931 CGTTGTCTTTCCTGTCCGGCTGTCACCCTCAATCACTATACTCACCGGTCTCCAAGGCCG 1990 || || || ||| | || || || ||||| | |||||| ||||| |||| Sbjct 679135 AGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCA 679076 Query 1991 CGCAGCGGCAT 2001 |||| ||| || Sbjct 679075 CGCATCGGTAT 679065 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 176/263 (67%), Gaps = 1/263 (0%) Strand=Plus/Minus Query 2230 CTGTCTGTTGTCCTCCCCTAGCAGATCGTCCGTCGATCTGGAAAGTACCCCATTCAAGAA 2289 |||| || | | || ||||||||||| ||| ||||| || ||| |||||| || | Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2290 CATCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTCGATTTAGCTCCCTGAATGT 2349 ||||| ||||| || || || || || || | ||| ||||| | ||||| Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2350 TCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTGGTAC 2409 | |||||||| || | ||| | ||| | | |||||| || | ||||| ||| | Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTC 599096 Query 2410 AATTGTATTTTCCTTCGAATTGGATGAGAATATGGAGATGAGGTTCCCCATTTTCATGTA 2469 || | |||||||| ||||| || || | || | ||| |||||||| || | || Sbjct 599095 AACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2470 GTTCTCTGCAAATTTTGATGAAT 2492 ||||| ||| | | | |||||| Sbjct 599035 ATTCTCAGCACACTCTTATGAAT 599013 Score = 77.0 bits (84), Expect = 6e-11 Identities = 146/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 1318 TTGTGGTTGAATCTG-ATTTGGAATGTTAGTGTGTTGTATTTGTTGTTGAATGGGTTCTG 1376 |||| |||||| ||| ||||||| || ||| || |||||||||||||| || Sbjct 596641 TTGTAGTTGAA-CTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1377 ATTGTGTCTGGTTATCGTGAAATATAGGGGATTTGTTA-TCCCGAAGGTATAAACGCCAC 1435 | ||||| |||||| ||||||| || |||||| || | || || | ||| |||||| Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAA-GCATATACGCCA- 596525 Query 1436 TCGTTGC-TTGATGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTTATGCAGTC 1494 | ||||| || | |||||| | ||||| |||| |||||||| || |||| | Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1495 TAAGTGTATGTAATAAGAGCAGCCACA 1521 | ||| |||||| | ||| ||||| Sbjct 596464 AATATGTTGGTAATATGTGCAACCACA 596438 >seq2957 Length=4215098 Score = 77.0 bits (84), Expect = 6e-11 Identities = 158/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 1309 TTCCTCAAGTTGTGGTTGAATCTG-ATTTGGAATGTTAGTG-TGTTGTATTTGTTGTTGA 1366 ||| | | ||||| |||||| ||| || |||| ||| || ||||| ||||||||||| Sbjct 1238755 TTCTTGAGGTTGTCGTTGAA-CTGTATCTGGA-TGTCTATGATGTTGAGTTTGTTGTTGA 1238812 Query 1367 ATGGGTTCTGATTGTGTCTGGTTATCGTGAAATATAGGGGATTTGTTATCCCGAAGGTAT 1426 ||| || | ||||| |||||| ||||||| || |||||| || | |||||| Sbjct 1238813 ATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTAT 1238872 Query 1427 AAACGCCACTCGTTGC-TTGATGCGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATT 1485 | || || | ||||| ||| |||| ||| || | | ||||| |||||||| || Sbjct 1238873 ATACTTCA-TTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTT 1238931 Query 1486 TATGCAGTCTAAGTGTATGTAATA-AGAGCAGCCACAGTCCAGATC 1530 || ||| | ||| | |||||| | ||| ||||| | ||||| Sbjct 1238932 CATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATC 1238977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8761272453060