Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003830.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq1694 122 1e-24 seq1129 122 1e-24 seq519 118 2e-23 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 196/279 (70%), Gaps = 2/279 (1%) Strand=Plus/Minus Query 1513 GTCCAATTTCTCAGTGATGCGTTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCC 1572 |||||||| | || | | |||||||||| | |||||||||||||| ||||| Sbjct 599854 GTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCT 599795 Query 1573 TCACCAGGATTGCAAAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTACCG 1632 ||||| ||||| || | ||||||| || ||| | | |||||||||||| | || || Sbjct 599794 TCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCA 599735 Query 1633 TACTTGCAATTGGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCCTTCCAGTGCTTTAAC 1692 |||||||||| |||||| || || || |||| | || ||| ||| | ||||| | | Sbjct 599734 TACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATC 599675 Query 1693 TTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAGTAGAC 1751 ||| || |||| || || | ||||||||| | |||| | || ||| || | || Sbjct 599674 TTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGGTGCATCATTCTAGAATAC 599616 Query 1752 CTTTGGGTTGAAGTCCAGATGACCACTTAGGTAATTATG 1790 | |||||| || ||||| |||| ||||||||| Sbjct 599615 TGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 96.9 bits (106), Expect = 6e-17 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 1515 CCAATTTCTCAGTGATGCGTTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCCTC 1574 |||||| |||| | | ||||||||||| | | ||||||| | ||| ||||| || Sbjct 596256 CCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTC 596197 Query 1575 ACCAGGATTGCAAAGCACGATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTACCGTA 1634 || ||||||| | ||||||| |||||| || |||||||||| ||| || || || || Sbjct 596196 ACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATA 596137 Query 1635 CTTGCAATTGGATTGCCA 1652 ||||||||| |||||| Sbjct 596136 CTTGCAATTACTTTGCCA 596119 >seq1129 Length=1508174 Score = 122 bits (134), Expect = 1e-24 Identities = 242/352 (69%), Gaps = 10/352 (3%) Strand=Plus/Minus Query 1534 TTTTCCTCTTTGTTGAGGAAATCTTTATAGCTGGCACCCTCACCAGGATTGCAAAGCACG 1593 ||||||||||| | |||||||||||||||| ||||| ||||| ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1594 ATTGCTGGGATCCCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGGATTGCCAG 1653 |||| ||||| ||||||||| |||| || || || ||||||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1654 TCCTTCTGGGCCCCCAGAAGTTCCTTCCAGTGCTTTAACTTT-AGATAGTGCGGTGCGAC 1712 | ||| | | |||| | | || ||| | ||||| | |||| || |||| || | || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTAC 679238 Query 1713 GTCATCAATGACGTTATACTCCACTTCGTTCGAGTAGACCTTTGGGTTGAAGTCCA---G 1769 ||||| ||||| ||||| | || || | | || | |||||| || | | Sbjct 679237 ATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTG 679178 Query 1770 ATGACCACTTAGGTAATTATGTGGGCCTAATGCCCTAGCCCACATCGTCTTCCCTGTCCT 1829 ||| || | | ||||||||| || | | || | ||| | | || || ||| | | Sbjct 679177 ATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--T 679120 Query 1830 CGAAT--CACCTTCCACGATGATACTAATAGGTCTTTCCGGCCGCGCAGCGG 1879 ||| | ||||| | ||| ||||| ||||||| || |||| |||| ||| Sbjct 679119 CGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1501 GCATTCTTTATGGTCCAATTTCTCAGTGATGCGTTTTCCTCTTTGTTGAGGAAATCTTTA 1560 ||||| | || ||||||| | || | | | |||||||| || | |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1561 TAGCTGGCACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATCCCTCCTTTAATTTGA 1620 ||| |||||||||| ||| ||| | ||||||| |||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1621 ACTGGCTTACCGTACTTGCAATTGGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCCTTC 1680 || | || | |||||||||| |||||| || || || |||| | | ||| ||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1681 CAGTG----CTTTAACTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1730 || || || | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8319697848800