Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003856.1 Length=2607 Score E Sequences producing significant alignments: (Bits) Value seq1129 136 7e-29 seq519 127 3e-26 seq1694 123 4e-25 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 7e-29 Identities = 246/354 (69%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 1513 ATTTTCTTGTTTATTAAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCAC 1572 |||||| | ||||| |||||||||||||||| | || ||||| ||||| || | | Sbjct 679416 ATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAA 679357 Query 1573 GATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTGCCA 1632 ||||||||| | | ||||||||| |||| || || |||||||| || || ||||| Sbjct 679356 GATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA 679297 Query 1633 GTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCTTTAATTTCAAATAGCTAGGGCTGAC 1692 ||||| | | ||||||| || |||||| ||||||| | || || || | || | || Sbjct 679296 ATCTTT-TTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTAC 679238 Query 1693 ATCATCAATGACGTTATATTCTACGTCAT--TCGAATAGACCCTAGAATTGAAATCCA-- 1748 |||||| ||||| |||||| | | |||| | ||||| | | |||||||| | Sbjct 679237 ATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAG 679180 Query 1749 -GATGACCTGACAGATAATTATGCTTTCCTAATGATCTTGCCCACATTGTCTTGCCGGTT 1807 |||| || | |||||||| | | ||| | ||| | | || ||||| || Sbjct 679179 TGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATT 679120 Query 1808 CTTGAAT--CACCTTCGACGATGATACTAATAGGTCTCTCTGGCCGCGCAGCGG 1859 | || | ||||| | ||| ||||| ||||||| ||||||| |||| ||| Sbjct 679119 C--GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 127 bits (140), Expect = 3e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 1513 ATTTTCTTGTTTATTAAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCAC 1572 |||||| | |||| ||||||||||||||| | ||||||| ||| ||| | || Sbjct 1742290 ATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATAC 1742349 Query 1573 GATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACAGTTTGACTGCCA 1632 ||||||||| ||||| |||||||||| ||| | || | | |||| || || ||||| Sbjct 1742350 GATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCA 1742409 Query 1633 GTCTTTCTGGGCCCCAATTAATTCTTTCCAATGCT---TTAAT-TTCAAATAGCTAGG-G 1687 ||||| || ||||||| |||||||||||||||| | || || || || | || | Sbjct 1742410 ATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAG 1742469 Query 1688 CTGACATCATCAATGACGTTATATTCTACGTCATT 1722 || |||||||||||||| |||||| | | ||||| Sbjct 1742470 CT-ACATCATCAATGACATTATATGTTGCATCATT 1742503 >seq1694 Length=789422 Score = 123 bits (136), Expect = 4e-25 Identities = 180/251 (72%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 1481 GCATTATGTATTGTCCAGTTTTGTAATGCCTGATTTTCTTGTTTATTAAGGAAATCTTTA 1540 ||||| || | ||||| || | | ||| |||||| | || || ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1541 TAGCTGGAGCCCTCACCAGGATTGCATAGCACGATTGATGGAATGCCCCCTTTAATTTGA 1600 ||| | || ||||| ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1601 ACTGGCTTTCCATACTTACAGTTTGACTGCCAGTCTTTCTGGGCCCCAATTAATTCTTTC 1660 || | || |||||||| || | ||||| ||||| || ||||||| ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1661 CAATGCTTTAATTTCAAATAGCTAGG-GCTGACATCATCAATGACGTTATATTCTACGTC 1719 | ||||| | || || || | || |||| ||||||||||| | |||| | | | || Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTATCTGGTGCATC 599628 Query 1720 ATTC--GAATA 1728 |||| ||||| Sbjct 599627 ATTCTAGAATA 599617 Score = 78.8 bits (86), Expect = 2e-11 Identities = 84/111 (76%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1513 ATTTTCTTGTTTATTAAGGAAATCTTTATAGCTGGAGCCCTCACCAGGATTGCATAGCAC 1572 |||||| | ||||| | ||||||| | ||| | || |||| ||||||| | || Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1573 GATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCATACTTACAGTT 1623 ||||||||| ||||| |||||||||| ||| || || |||||||| || || Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8233300986524