Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003865.1 Length=2663 Score E Sequences producing significant alignments: (Bits) Value seq1129 127 3e-26 seq519 127 3e-26 seq1694 118 2e-23 >seq1129 Length=1508174 Score = 127 bits (140), Expect = 3e-26 Identities = 253/373 (68%), Gaps = 4/373 (1%) Strand=Plus/Minus Query 1488 AATTTGGCATTTTTGAGTGTCCACTCTCTAAGTGCTGCATTTTCAGCTTTGTCGAGGAAA 1547 |||| ||||||| ||| ||| | | | || || ||||||| |||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1548 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCACAGCACGATTGAAGGGATACCGCCTTTA 1607 |||||||||| || || || || ||||| |||| | |||||| |||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1608 ATTTGAACTGACTTTCCATATTTACAGTTGGACTGCCAGTCCCTCTGGGCCCCAATCAAT 1667 ||| |||| | || ||||| || || || ||||| | | | | | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1668 TCTTTCCAGTGCGTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTTG 1727 |||||| | ||| | | |||||| ||| |||| || ||||| ||||| ||||| | Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1728 ACGTCATTTGAGAACACCCTAGAATTGAAATCCA---GATGACCACTCATATAGTTATGT 1784 | ||||| ||| || |||||||| | |||| || | || || ||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGA 679156 Query 1785 GGGCCTAAAGCACGAGCCCACATTGTTTTGCCAGTTCTAGAATCACCTTCGACTATTACA 1844 || | | | || ||| | | |||||||| ||| | ||||| | |||| | Sbjct 679155 CGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTATA 679096 Query 1845 CTAATAGGTCTAT 1857 || ||||||||| Sbjct 679095 CTTTTAGGTCTAT 679083 >seq519 Length=3254320 Score = 127 bits (140), Expect = 3e-26 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 1488 AATTTGGCATTTTTGAGTGTCCACTCTCTAAGTGCTGCATTTTCAGCTTTGTCGAGGAAA 1547 |||| ||||||| || |||| | | || ||| ||||||| | || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1548 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCACAGCACGATTGAAGGGATACCGCCTTTA 1607 ||||||||| || ||||| | ||| ||||| |||||||| ||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1608 ATTTGAACTGACTTTCC-ATATTTACAGTTGGACTGCCAGTCCCTCTGGGCCCCAATCAA 1666 |||| ||| || ||||| | | || || || ||||| || | || |||||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1667 TTCTTTCCAGTG----CGTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTAT 1722 ||||||||| || | | |||||| || ||||| || ||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1723 ACTTGACGTCATTTGAGAACAC 1744 | | | ||||| |||| || Sbjct 1742491 ATGTTGCATCATTGCAGAATAC 1742512 >seq1694 Length=789422 Score = 118 bits (130), Expect = 2e-23 Identities = 206/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 1488 AATTTGGCATTTTTGAGTGTCCACTCTCTAAGTGCTGCATTTTCAGCTTTGTCGAGGAAA 1547 |||| ||||||| ||| ||||| | | || || ||||||| ||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1548 TCTTTATAGCTGGCCCCCTCTCCAGGATTGCACAGCACGATTGAAGGGATACCGCCTTTA 1607 ||||||||| || || || || ||||| |||| |||||||| | ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1608 ATTTGAACTGACTTTCCATATTTACAGTTGGACTGCCAGTCCCTCTGGGCCCCAATCAAT 1667 |||||||| || ||||| || || | ||||| || | || ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1668 TCTTTCCAGTGCGTTAGCTTTAAATAATGCGGAGCGACGTCATCAATGACGTTATACTTG 1727 |||||| | ||| | | |||||| ||| ||||| | ||||||||| | |||| || | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT-CTGG 599634 Query 1728 -ACGTCATTTGAGAACACCCTAGAATTGAAATCCAGATGACCACTCATATAGTTATG 1783 | ||||| |||| || |||||||| ||||| || || || ||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8412494478652