Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003866.1 Length=2583 Score E Sequences producing significant alignments: (Bits) Value seq1129 107 3e-20 seq1694 105 1e-19 seq519 100 5e-18 >seq1129 Length=1508174 Score = 107 bits (118), Expect = 3e-20 Identities = 144/199 (72%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 1653 CATTTTCCTCTTTGTTGAGGAAACTTATATAACTGCTCCCCTCTCCTGGATTGCACAGCA 1712 ||||||||||||| | |||||| | |||| | || || |||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1713 CGATTGAGGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCC 1772 |||||| || | | |||||||||| |||| || || || ||||| || || ||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1773 AGTCCCTTTGGGCCCCAATAAGCTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGAGCTA 1832 | | | ||| | ||||||| | |||||| | ||||| | ||||| ||| |||| || Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1833 TGTCATCAATGACGTTATA 1851 ||||| ||||| ||||| Sbjct 679238 CATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 105 bits (116), Expect = 1e-19 Identities = 170/238 (71%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 1616 AATTTTGCATTTTTGGTAGTCCACGCTCTT-AGTGATGCATTTTCCTCTTTGTTGAGGAA 1674 |||| |||||||| | ||||| |||| || | |||||||||||| | |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAA 599814 Query 1675 ACTTATATA--ACTGCTCCCCTCTCCTGGATTGCACAGCACGATTGAGGGTATGCCACCT 1732 | | |||| || || || || |||||||| |||| |||||||| | ||| ||| | Sbjct 599813 ATCTTTATAGGAC-GCACCT-TCACCTGGATTACACAATACGATTGATGAGATGACACAT 599756 Query 1733 TTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAATA 1792 ||||||||||| | || || ||||| || | |||||| || |||| |||||||| Sbjct 599755 TTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATA 599696 Query 1793 AGCTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGAGCTATGTCATCAATGACGTTAT 1850 | |||||| | ||||| | ||||| ||| |||||| ||||||||| | |||| Sbjct 599695 AATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 173/244 (71%), Gaps = 12/244 (5%) Strand=Plus/Plus Query 1616 AATTTTGCATTTTTGGTAG--TCCACGCTCTT-AGTGATGCATTTTCCTCTTTGTTGAGG 1672 |||| ||||||| |||| |||| |||| || | | |||||||||| || | ||| Sbjct 1742252 AATTCAGCATTTT--GTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGG 1742308 Query 1673 AAACTTATATAAC-TGCTCCCCTCTCCTGGATTGCACAGCACGATTGAGGGTATGCCACC 1731 ||| | |||| ||| ||| || | | ||| ||||| |||||||| || |||||||| Sbjct 1742309 AAATCTTTATAGGATGCACCC-TCACTTAGATAGCACAATACGATTGATGGGATGCCACC 1742367 Query 1732 TTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCAAT 1791 |||||||| ||| | || | |||| || || |||||| || |||| ||||||| Sbjct 1742368 TTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAAT 1742427 Query 1792 AAGCTCTTTCCAGTG----CTTTAGCTTTAGATAATGCGGAGCTATGTCATCAATGACGT 1847 | |||||||| || || | ||||| || ||||||| ||||||||||| | Sbjct 1742428 CAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACAT 1742487 Query 1848 TATA 1851 |||| Sbjct 1742488 TATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8156503775612