Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003867.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq1129 150 3e-33 seq519 131 3e-27 seq1694 129 1e-26 >seq1129 Length=1508174 Score = 150 bits (166), Expect = 3e-33 Identities = 272/389 (70%), Gaps = 18/389 (5%) Strand=Plus/Minus Query 1627 GCATTCTTGATAGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTA 1686 ||||| | || ||| | ||| |||| || ||||||||||| | |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1687 TAGCTGGAGCCCTCACCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGA 1746 |||| | || ||||||||||| || | | ||||| ||||| |||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1747 ACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAATTCTTTC 1806 || || || || ||||||||||| ||||| ||| | | | |||| | ||| |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTC 679270 Query 1807 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGC 1865 | ||||| | |||| || |||| || | || ||||| ||||| ||||| | | Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGTTGCATC 679211 Query 1866 AT--TTGAATA--GACTCGAGAATTGAAATCCAA---ATGGCCCATGAGATAATTATGTG 1918 || | ||||| || | | |||||||| || |||||| | | |||||||| Sbjct 679210 ATTGTGGAATACTGATTTG----TTGAAATCTAAGTGATGGCCGTTAATGTAATTATGAC 679155 Query 1919 GACCCAGTGCACGTGCCCACATTGTCTTCCCTGTTCTCGAGT--CTCCTTCAACTATGAT 1976 | | |||| || ||| | | || || ||| | |||| | ||||||| || || Sbjct 679154 GGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTAT 679097 Query 1977 ACTAATAGGTCTATCTGGCCGCGCAGCGG 2005 ||| ||||||||||||||| |||| ||| Sbjct 679096 ACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 131 bits (144), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1640 TCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGAGCCCT 1699 |||| ||| |||| ||| |||||||| || | ||||||||||||||| | |||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1700 CACCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGT 1759 ||| | ||| ||| | ||||||| |||||| ||||||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1760 ACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAATTCTTTCCAGTG----CTTT 1815 |||||||||| ||||| ||| | || |||| | |||||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1816 AGCTTTAGATA-GTGCGGTGCGACGTCATCAATGACGTTATA 1856 | ||||| || ||| || || || ||||||||||| ||||| Sbjct 1742451 ATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1627 GCATTCTTGATAGTCCAGTTCCTGAGTGCTGTGTTTTCCTCTTTGTTCAGGAAATCTTTA 1686 ||||| | || ||||| ||| |||| || |||||||||| | | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1687 TAGCTGGAGCCCTCACCTGGATTGCAAAGCACGATTGCTGGGATCCCACCTTTAATTTGA 1746 ||| | || ||||||||||| || | ||||||| || ||| ||| |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1747 ACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTCTCTGGGCCCCCAGCAATTCTTTC 1806 || | || || |||||||||| ||||| ||| | || |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1807 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1855 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 95.1 bits (104), Expect = 2e-16 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1660 TTTTCCTCTTTGTTCAGGAAATCTTTATAGCTGGAGCCCTCACCTGGATTGCAAAGCACG 1719 ||||||||||| | || ||||||| | ||| | || |||| | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1720 ATTGCTGGGATCCCACCTTTAATTTGAACTGGCTTGCCGTACTTGCAATT 1769 |||| |||||| ||||||||||||| ||| || || || ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8274899475768