Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003891.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq519 100 5e-18 seq1694 89.7 9e-15 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 328/495 (66%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 2103 AAATTAGCATTTAAATTATGAAATTGTAATACAAAA-TCTTTGGGAGCTTTCTCCCTTAA 2161 ||||||| ||| ||||||||| |||||| | ||| |||||||| ||||||| ||| Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGT-CTTTCTCTTTTAT 1748883 Query 2162 AATATCGAGGGCCGCAGCT-TTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGG 2220 || | | || ||| || |||| | | |||| || || || || ||| | || Sbjct 1748884 TATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATCTGCAA 1748942 Query 2221 CAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGA 2280 | || || || ||| ||| | ||||| ||||| ||||| ||| | | |||| | Sbjct 1748943 CTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACAT 1749002 Query 2281 AGTCTCCGTCTTTTTCCACATAGGCCTTGACATCTGAACTGCTC--TTAGCTTTCTGAAT 2338 ||||||| || ||||| | || | || || | || | | ||||| | |||| Sbjct 1749003 AGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAAC 1749062 Query 2339 GTTTGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGT 2398 ||||||||||| || | | ||| || ||| | |||||| || | | ||| || Sbjct 1749063 ATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGT 1749121 Query 2399 GCATTGGAATTTTCCTTCGAACTGGATGAGCACGTGGAGATGAGGTTCCCCAT-CTACGT 2457 ||| |||||| ||| ||||| || || || || | ||| ||||||| | || || Sbjct 1749122 GCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT--GT 1749178 Query 2458 GAAGCTCTCTACACACTCTAATGAATAATTTAGAAGT-TGGAGTTTTTACGGTTTGTAAT 2516 | || ||||| |||||| | |||||| || ||| | | | || || ||||| | | Sbjct 1749179 GTAGTTCTCTGCACACTTTTATGAAT--TTAAGATTTGTAGGGTAGTTGAGGTTTTTGAG 1749236 Query 2517 TGGGAAAGGTGCCTC-TCTTTGGAAAGAGAACATTTAGGGTATGTGAGGAAATAATTTTT 2575 | | | | || ||||| | || ||||| | ||| | ||||| ||||||||||| Sbjct 1749237 ATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTT 1749296 Query 2576 TGCATTTATATTAAA 2590 |||||| |||| Sbjct 1749297 GCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 89.7 bits (98), Expect = 9e-15 Identities = 270/411 (66%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 2103 AAATTAGCATTTAAATTATGAAATTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAAA 2162 ||| | | ||| | ||||||| ||| || ||| | |||||| ||||||| ||| Sbjct 599391 AAACTGGAATTGACATTATGATATTATAGATGAAACTTTTTGGGT-CTTTCTCTTTTATT 599333 Query 2163 ATATCGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCA 2222 || | | | ||| || |||||| ||||| || | || | ||| | | | Sbjct 599332 ATTTGTAATGTTGCATCTCTGGACCTAGAATTAATCACTTCAGTGTATACACCTGCAACT 599273 Query 2223 GATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAG 2282 | ||||| || || ||||| ||||| ||||||||||| ||| | || |||| | | || Sbjct 599272 GTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAG 599213 Query 2283 TCTCCGTCTTTTTCCACATAGGCCTTGACATCTGA-ACTGCTCTTAGCTTTCTGAATGTT 2341 ||||| || ||||| | || | || |||| || ||| | || | ||||| | Sbjct 599212 TCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGAT-TTTGTAGACTGAACACT 599154 Query 2342 TGGATGGAAATGTGTTGATCTGGTTGGGGAAACCAGGTCGAAGAATCTGTTATTTGTGCA 2401 ||||||||| || | | |||| | ||| | |||||| || || | || || || Sbjct 599153 TGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCA 599095 Query 2402 TTGGAATTTTCCTTCGAACTGGATGAGCACGTGGAGATGAGGTTCCCCATCTACGTGAAG 2461 |||||||||| ||| | || || ||||| | ||| |||||||| | || | Sbjct 599094 ACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAA 599035 Query 2462 CTCTCTACACACTCTAATGAAT----AATTTA----GAAGTTGGAGTTTTT 2504 |||| |||||||| |||||| ||||| | |||||| |||||| Sbjct 599034 TTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTT 598984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687684484420