Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003896.1 Length=2766 Score E Sequences producing significant alignments: (Bits) Value seq519 93.3 7e-16 seq1694 84.2 4e-13 seq3069 82.4 1e-12 seq1129 82.4 1e-12 seq2957 77.0 6e-11 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 7e-16 Identities = 235/352 (67%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 2242 CCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTC 2301 || || ||||||| |||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2302 TCCAGATAGGACTTGACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGT 2361 || | || || || || | || | |||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2362 GCTGACCTGGTGGGG-GAGACCAGGTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCC 2420 | ||| | ||| || | | ||| || |||| |||||| |||| ||| || || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2421 TTCGAACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAAC 2480 | ||| |||||||| || || | ||| || ||||| || || |||||| |||| || Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2481 TTTAATATATTTTTTGGATGTTGGGGTTTCTAGGTTATTTAATTGGGAAAGGGCTTCTTC 2540 | | || ||||| ||| ||| | ||| | || | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2541 TTTAGTGAGAGAGCAT-TTGGGATAAGTGAGGAAATAATTCTTAGCATTTAT 2591 ||| ||||| || ||| |||||| |||||||||||| ||| || |||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 11/205 (5%) Strand=Plus/Plus Query 1308 TCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACG 1367 |||| || |||| ||||| |||||| ||| || |||||||||||||||| ||| || Sbjct 1741878 TCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATT 1741937 Query 1368 GGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCA--GATATA 1425 | | | | |||| | | |||||||||||||||| |||||| | ||| |||||| Sbjct 1741938 GTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATA 1741997 Query 1426 CTCGCCATTCAT-CGCTTGACGAGC--AGTGATGGGTTCCCCTGTGCGTGAATCCATGGT 1482 | ||||| | | || |||| ||||| ||||||| ||| | ||||||| || Sbjct 1741998 --CACCATTGTTGCACT----GAGCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1483 TATGGCAGTTGATATGCAGGTAGTA 1507 | ||||| || || |||| || Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATA 1742076 >seq1694 Length=789422 Score = 84.2 bits (92), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 1304 GCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTG 1363 ||| |||| | || || ||||||| |||| || | ||||||||| |||||| |||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1364 AACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAAC-CCTCCAG-A 1421 || || | | | ||||| | | ||||||||||||||||||||||| || ||| || | Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1422 TATAC 1426 ||||| Sbjct 600112 TATAC 600108 Score = 80.6 bits (88), Expect = 5e-12 Identities = 149/213 (70%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 2385 GTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCCTTCGAACTGGATAAGCACGTGGAG 2444 |||||| || |||||| |||| | ||| || ||| |||||||| ||| ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2445 ATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACTTTAATATATTT----TTTGGATG 2500 ||| || ||||| | || ||||||||||| || | || |||| |||| | | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2501 TTGGGGTTTCTAGGTTATTTAATTGGGAAAGGGCTTCTTCTTTAGTGAGAGAGCAT-TTG 2559 | | | ||||| || | || ||| | || ||||| | |||||| ||| ||| Sbjct 588129 ATAG----TTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTG 588074 Query 2560 GGATAAGTGAGGAAATAATTCTTAGC-ATTTAT 2591 ||| ||||||||||||| || ||||| |||||| Sbjct 588073 GGA-AAGTGAGGAAATAGTT-TTAGCTATTTAT 588043 Score = 78.8 bits (86), Expect = 2e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 1316 TTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACGGGCGCTTG 1375 |||| ||||||||||| ||| | || ||||||||||||| |||||| || | | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1376 TGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCGCCATTC 1435 | ||| | | |||||||||||||| ||||||| || ||| ||| ||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT- 596523 Query 1436 ATCGCTTGACGAG---CAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTATGGCAGTT 1492 | || |||| |||||| ||||||| |||| ||||||| ||| ||| || Sbjct 596522 GTTGC--ACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1493 GATATGCAGGTAGTA 1507 ||||| |||| || Sbjct 596464 AATATGTTGGTAATA 596450 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 1300 CAATGCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTA 1359 ||| ||| |||| |||||| ||||| |||||| ||| | ||||||||||||| || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1360 GTTGAACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCA 1419 ||| || || | | | ||||| | | | ||||||||| ||||||||||| || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1420 GATATACTCGCCATTCATCGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCAT 1479 ||||| || |||| | | | | ||||| || ||| ||||| ||| ||| Sbjct 3754521 AATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Query 1480 GGTTATGGCAGTTGATATGCAGGTAGTA 1507 ||| | ||| || || | ||||||| Sbjct 3754581 TGTTCTTGCAATTAATGTCTTGGTAGTA 3754608 >seq1129 Length=1508174 Score = 82.4 bits (90), Expect = 1e-12 Identities = 95/127 (75%), Gaps = 1/127 (1%) Strand=Plus/Minus Query 1308 TCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACG 1367 |||| | ||||| |||||||||||| ||| | ||||||| |||| ||| |||||||| Sbjct 693773 TCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAACG 693714 Query 1368 GGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACT 1427 | | | | ||||| | | | |||||| ||||| ||||| || ||| ||| |||| Sbjct 693713 GTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATATA 693655 Query 1428 CGCCATT 1434 ||||||| Sbjct 693654 CGCCATT 693648 >seq2957 Length=4215098 Score = 77.0 bits (84), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 8/211 (4%) Strand=Plus/Plus Query 1301 AATGCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAG 1360 || ||| || | ||||||| |||||||||||| ||| | ||||||| | | |||| | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1361 TTGAACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAG 1420 ||||| | | | | ||||| | | |||||||||||| || ||||||| || | || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1421 ATATACTCGCCATTCATCGCTTGAC-GAGCAGTGATG-GGTTCCC--CTGTGCGTGAATC 1476 |||| | ||||| | | || |||| | ||| |||| || | ||||| |||| Sbjct 1238869 GTATATAC----TTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATC 1238924 Query 1477 CATGGTTATGGCAGTTGATATGCAGGTAGTA 1507 ||| ||| |||| || |||| ||| || Sbjct 1238925 CATTGTTCATATAGTTAATGTGCAAGTAATA 1238955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8738873290470