Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003897.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 253/371 (68%), Gaps = 18/371 (5%) Strand=Plus/Plus Query 2231 ACCTCCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCATGATCAAGGATGTCTCCGTC 2290 || ||| ||||| ||||||||||| | ||| ||| | | ||| | | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2291 TTTCTCCATGTAGGTTTTGACAT---CGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2347 || || ||||| | ||| |||| | |||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2348 GAAATGTGCTGACCTGGTTGGGGAGGTA-AGGTCGAAGAATCTATTG-TTCTTGCACTGG 2405 ||| || | || ||| ||| | || | ||| || |||| |||| || |||| | Sbjct 1743255 GAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATC-ATTGATTGGTGCAACAG 1743312 Query 2406 AATTTTCCTTCGAACTGGATGAGAACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCT 2465 ||||| ||| ||| ||||| || ||||| || || || ||| | ||| || ||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2466 CTGCAGATTCTAATGAATTTT---TTAGAAGTTGGTGTTTGGAGATTTAAGAATTGGGAA 2522 |||| | ||| ||||||||| || | || ||| || ||| || || || | Sbjct 1743373 TTGCACACTCTTATGAATTTTAGATTTGTAG--GGTAGTT-GAGGCTTTTGAGATGATGA 1743429 Query 2523 AGTGCTTCTTCTTTAGTGAGGGAGCA-CTTGGGATAAGTGAGAAAATAATTTTTTGCATT 2581 || || || ||||| |||||||| || ||||||| ||||||| |||| |||||| ||| Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATT 1743488 Query 2582 TAATTTAAACC 2592 || | |||||| Sbjct 1743489 TATTCTAAACC 1743499 Score = 86.0 bits (94), Expect = 1e-13 Identities = 347/526 (66%), Gaps = 27/526 (5%) Strand=Plus/Plus Query 2079 ATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACATAA 2138 ||| |||| | || || | | | ||||||||||| ||||| ||| |||||| || || Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2139 -TCTTTGGGAGCCTTCTCCCTTAATATATTGAGGGCCTCAATTTTTGACCCTGCGTTGAT 2197 |||||||| | ||||| ||| ||| | | || || | ||| | || || Sbjct 1748861 CTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAATTAAT 1748919 Query 2198 TGCCTCGGCATATGCGTCGTTGGCAG-ATTGGCA-ACCTCCTCTAGCTGATCTTCCATCG 2255 || || || ||| | || || | ||| | || ||| ||| | ||||||||||| Sbjct 1748920 CGCTTCAGCGTATACATC--TGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCA 1748977 Query 2256 ACTTGGAAAACTCCATGATCAAGGATGTCTCCGTCTTTCTCCATGTAGGTTTTGAC--AT 2313 | ||| ||| | | ||| | |||||| || || || ||||| | ||| || || Sbjct 1748978 ATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCAT 1749037 Query 2314 C---GCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGG 2370 | | |||| |||||| |||| || |||||||| || | || | ||| Sbjct 1749038 CAAAGGTTGA---TTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT 1749094 Query 2371 AGGTAAGGTCGAAGAATCTATTG-TTCTTGCACTGGAATTTTCCTTCGAACTGGATGAGA 2429 ||| | ||||| || | |||| || |||| |||||| ||| ||||| || || Sbjct 1749095 TTGTATG-TCGAAAAACC-ATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATT 1749151 Query 2430 ACATGTAAGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATGAATTTT--- 2486 ||||| || || || |||| | ||| || |||||||| | | | |||||||| Sbjct 1749152 ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGA 1749210 Query 2487 TTAGAAGTTGGTGTTTGGAGATTTAAGAATTGGGAAAGTGCTTCTTCTTTAGTGAGGGAG 2546 || | || ||| ||| || ||| || || ||| | || ||||| ||||| | Sbjct 1749211 TTTGTAG--GGTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAA 1749267 Query 2547 CA-CTTGGGATAAGTGAGAAAATAATTTTTTGCATTTAATTTAAAC 2591 || ||||||| ||||||||||||||||||| ||||| | ||||| Sbjct 1749268 CATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAAC 1749312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8719683322300