Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_003898.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq519 89.7 9e-15 seq1694 87.8 3e-14 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 89.7 bits (98), Expect = 9e-15 Identities = 127/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1292 TTTCCTCAGGTTGTAGTTGAATTGAATTTGTATTGTCATGACGTCGTGGTTCTGTAGAAA 1351 |||||| || ||||||||||| || || || ||| |||| ||||||||| | ||| Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1352 TGGTCTCTGGTTGTGTTGTGTTATTTTGAAATAGAGGGGATTGTTGACTGTCCAGGTATA 1411 | ||||| | || | ||||||| ||||||||||||| ||| | | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1412 CACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1465 || ||||| | ||| ||||| ||||| ||||||| ||| || ||||||| Sbjct 1741996 TACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq1694 Length=789422 Score = 87.8 bits (96), Expect = 3e-14 Identities = 149/208 (72%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 1302 TTGTAGTTGAATTGAATTTGTATTGTCATGACGTCGTGGTTCT-GTAGAAATGGTCTCTG 1360 ||||||||||| || ||||| || || | ||||||||| | || ||| |||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAA-TGGTGTCCT 596583 Query 1361 GTTGTGTTGTGTTATTTTGAAATAGAGGGGATTGTTGACTGTCCAGGTATACACGCCATT 1420 | |||| ||||||| ||||||||||| |||| ||| ||| | ||| |||||||| Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1421 CTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGTGATGC-GCAGTT 1478 | ||| |||| |||||| ||||||| |||| | ||||||| | | | ||| || Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT-CGTTCCTGCAATT 596465 Query 1479 AATTCCAAGATAATAAGAGCACCCACAA 1506 ||| | ||||| | ||| |||||| Sbjct 596464 AATATGTTGGTAATATGTGCAACCACAA 596437 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 126/175 (72%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1292 TTTCCTCAGGTTGTAGTTGAATTGAATTTGTATTGTCATGACGTCGTGGTTCT-GTAGAA 1350 |||||| | |||||||||||| || || || || |||| || |||| | | || ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1351 ATGGTCTCTGGTTGTGTTGTGTTATTTTGAAATAGAGGGGATTGTTGACTGTCCAGGTAT 1410 |||||| | |||||||||||| ||| ||||| ||||| | | ||| ||| |||| Sbjct 693715 C-GGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTAT 693658 Query 1411 ACACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1465 | |||||||| | | | || ||| ||| || | ||| || ||| ||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655685646540