Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004005.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq519 161 2e-36 seq3069 109 1e-20 seq1694 100 5e-18 seq1129 98.7 2e-17 >seq519 Length=3254320 Score = 161 bits (178), Expect = 2e-36 Identities = 346/507 (68%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 2111 AAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCC 2170 ||||| | | | ||||| ||| | ||||||||| |||||| | | | ||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2171 TTCTCTTTTAATATATTGAGGGCCTCGGATTTATTG-CCT-GAATTGAGTGCTTCGGCAT 2228 |||||||||| ||| | | | | | || | ||| ||| ||||| | |||| | | Sbjct 1743058 TTCTCTTTTATTATTTGTAATG--TTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGT 1743115 Query 2229 ATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTC 2288 || | || | ||||| || ||| ||||| ||||| ||||| ||||| ||| | Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2289 CAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTG---TTGAGCTCT 2345 | |||| | | ||||||| || || || | ||| | || |||| | |||| | Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGAT---T 1743232 Query 2346 TAGCTGCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGG-GATACCAGGTCGAAG 2404 ||| |||| || ||||||| || | |||||| ||| |||| | ||| || Sbjct 1743233 TAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAA 1743291 Query 2405 AACCGTTGGTTCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGT 2464 || | ||| || | || | |||| ||| ||| |||||||| ||||| | ||||||| Sbjct 1743292 AATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGT 1743351 Query 2465 TCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCT 2524 ||||| || ||| |||||| |||| ||| | ||| ||||| |||||| ||| | Sbjct 1743352 TCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTG 1743411 Query 2525 AGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGATATGTTAG 2583 ||| |||| | || ||| || || ||||| | ||| ||||| |||||| | || || Sbjct 1743412 AGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAG 1743470 Query 2584 GAAATAATTTTTGGCATATATTTTAAA 2610 ||||| ||||||| || |||| |||| Sbjct 1743471 GAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 127 bits (140), Expect = 4e-26 Identities = 332/495 (67%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 2123 AAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAAT 2182 ||||| ||| | ||||||||| |||||| ||| | ||||||| | |||||||||| | Sbjct 1748825 AAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 1748884 Query 2183 ATATTGAGGGCCTCGGAT-TTATTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGC 2241 || | | || | | || ||| | |||| | ||||| || ||| | || | Sbjct 1748885 ATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATCTGCAAC 1748943 Query 2242 AGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAA 2301 || || || ||| ||| | ||||| ||||| ||||| ||| | | |||| | | Sbjct 1748944 TATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATA 1749003 Query 2302 GTCTCCGTCTTTCTCCACGTAGGTCTTGAC--ATCT---GTTGAGCTCTTAGCTGCCTGA 2356 |||||| || || || | ||| | || || ||| ||||| ||||| ||| Sbjct 1749004 GTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGAT---TTAGCATATTGA 1749060 Query 2357 ATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTC 2416 | || |||||||| || | ||| || ||| | | |||||| |||| ||| || Sbjct 1749061 ACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTG 1749119 Query 2417 TTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCG 2476 | || | |||| ||| ||| | || | ||||| | ||||||||||| | || | Sbjct 1749120 GTGCAGCAGAATTTCCCTGTGAACTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-G 1749177 Query 2477 TGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAAT 2536 || ||||||||||| ||||| ||| |||| |||||| ||| | |||||||| | Sbjct 1749178 TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGA 1749237 Query 2537 TGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGATATGTTAGGAAATAATTTTT 2595 || ||| | || ||||| | ||| |||| |||||| | || || ||||||||||| Sbjct 1749238 TGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTT 1749296 Query 2596 GGCATATATTTTAAA 2610 | || |||| |||| Sbjct 1749297 GCTATTTATTCTAAA 1749311 Score = 93.3 bits (102), Expect = 7e-16 Identities = 171/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 1320 TTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAAT 1379 ||||||| |||| |||||| |||||| || |||||||||||||| | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1380 GGCCGCTGGCTGTGTTC-TGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAAATAAA 1438 | | | ||| ||| |||||||||||||||||||| ||| || |||||| | | Sbjct 1741937 TGTCTCCT-CTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1439 AACGCCATTCTCTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTG 1497 || ||||| | ||| |||| | ||||| ||||||| ||| | ||||||| || Sbjct 1741996 TACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1498 TTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTT 1557 | ||||| | ||| |||| ||| ||| ||||||| || || | ||||| ||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTA 1742113 Query 1558 ATTG 1561 |||| Sbjct 1742114 ATTG 1742117 >seq3069 Length=10854949 Score = 109 bits (120), Expect = 1e-20 Identities = 174/246 (71%), Gaps = 8/246 (3%) Strand=Plus/Plus Query 1320 TTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAAT 1379 ||||||| |||| ||||||| |||||| || ||||||||||||| | |||| Sbjct 3754408 TTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAAT 3754467 Query 1380 GG---CCGCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAAATA 1436 || || ||| |||| ||||| ||||||||| |||||||| || || |||||| Sbjct 3754468 GGTCTCCTCTG---GTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATA 3754524 Query 1437 AAAACGCCATTCTCTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGAT 1495 | ||| |||| | ||| || || | ||||| || ||| ||||| ||| ||| | Sbjct 3754525 TATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGT 3754583 Query 1496 TGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCC 1555 | ||||| || | || ||||||||| ||| ||||| | || | |||||||| | || Sbjct 3754584 TCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTTCTCC 3754643 Query 1556 TTATTG 1561 | |||| Sbjct 3754644 TAATTG 3754649 >seq1694 Length=789422 Score = 100 bits (110), Expect = 5e-18 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 2380 TCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCCTTCGAA 2439 |||||| ||| | | |||||| ||| ||| || | |||| | |||| ||| ||| Sbjct 588267 TCTGTTAGGGTTTTGTATGTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAA 588208 Query 2440 TTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGAT 2499 |||| ||| || || | |||||||||||| | ||| ||||||||||| || | || Sbjct 588207 CTGGAGAAGTACGTGCAAATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTAT 588148 Query 2500 GTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGA 2559 | |||| |||||| | | |||||||| | || ||| | || ||||| || Sbjct 588147 GAATTTGAAATTTGTAAGATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGA 588088 Query 2560 GAGAGAACA-ATTGGGATATGTTAGGAAATAATTTTTGGCATATATTTTAAA 2610 ||||||||| |||||| | || |||||||| |||| | || |||| |||| Sbjct 588087 GAGAGAACATCTTGGGA-AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 Score = 98.7 bits (108), Expect = 2e-17 Identities = 247/370 (67%), Gaps = 8/370 (2%) Strand=Plus/Minus Query 2245 TTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTC 2304 ||||| || || ||||| ||||| ||||||||||| ||| | || |||| | | |||| Sbjct 599270 TTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTC 599211 Query 2305 TCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGA-GCT--CTTAGCTGCCTGAATGTT 2361 ||| || || || | ||| | || |||| | || ||| || | | ||||| | Sbjct 599210 TCCCTCCTTTTCAATGTATGATTTAACAT---TAGAGGCTGATTTTGTAGACTGAACACT 599154 Query 2362 CGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACA 2421 |||||||| || | |||||| ||| | | |||||| |||| ||| | | || Sbjct 599153 TGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCA 599095 Query 2422 TTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAG 2481 | |||| ||| ||||| || ||| || || | |||||||||||| || || | Sbjct 599094 ACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAA 599035 Query 2482 TTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTT-AATTGGG 2540 ||||| ||| ||| | ||| |||| |||| | | | | |||||||| || || Sbjct 599034 TTCTCAGCACACTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGAT 598975 Query 2541 AAAGTGCTTCCTCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTTTTGGCAT 2600 ||| | || ||||| ||||||| || | || | || ||||||| ||| | || Sbjct 598974 GAAGAACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTAT 598915 Query 2601 ATATTTTAAA 2610 |||| |||| Sbjct 598914 TTATTCTAAA 598905 Score = 78.8 bits (86), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 1318 CCTTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAA 1377 ||| | |||| |||| |||||| ||| || || || ||||||||||| | | Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1378 ATGG---CCGCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAAA 1434 |||| || || | ||| |||||||||||||||||| |||| || |||||| Sbjct 596592 ATGGTGTCCTCTAG---TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAG 596536 Query 1435 TAAAAACGCCATTCTCTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATG 1493 | | |||||||| | ||| | ||| |||||| ||||||| |||| ||||||| Sbjct 596535 CATATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATC 596477 Query 1494 ATTGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACA 1532 || |||| || | || |||| |||| ||| ||||| Sbjct 596476 GTTCCTGCAATTAATATGTTGGTAATATGTGCAACCACA 596438 >seq1129 Length=1508174 Score = 98.7 bits (108), Expect = 2e-17 Identities = 329/504 (65%), Gaps = 36/504 (7%) Strand=Plus/Minus Query 2125 ATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATAT 2184 ||| ||| ||| ||||||| |||||| ||| | ||||||| | |||||||||| ||| Sbjct 678893 ATTGGAAATTAGATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTAT 678834 Query 2185 AT-TGAGGGCCTC--GGATTTATTGCCT--GAATTGAGTGCTTCGGCATATGCGTCGTTG 2239 | | | || | || | | || ||||| | |||| ||||||| | || Sbjct 678833 TTGTAATATACTGTTGCATCTCTAAACTCAGAATTAATCGCTTTGGCATATACATCTGCA 678774 Query 2240 GCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATG 2299 | | ||||| || ||| ||||| |||| || || ||||| ||| | || |||| | Sbjct 678773 ACTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTACA 678714 Query 2300 AAGTCTCCG-----TCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCT 2354 |||||||| || || || | ||| | || | ||| || ||| | | Sbjct 678713 TAGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATCATTT--------AGCAGATT 678662 Query 2355 GAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGT 2414 ||| || |||||| ||| | | |||| | || |||||| |||| ||| | Sbjct 678661 GAACATTTGGATGGTTCTGT--TACTGTGTT---GTAT-----GTCGAAAAACCTTTGAT 678612 Query 2415 TCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTC-----CCC 2469 | | ||| | |||| ||| ||| |||| ||| || || | ||||||||| ||| Sbjct 678611 TAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGCCC 678552 Query 2470 ATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTT 2529 || | | | |||| | |||| | | | ||| | ||| |||||| ||| | ||| | Sbjct 678551 GTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTTGTAGGGTAGTTGAGG-T 678493 Query 2530 TTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACA-ATTGGGATATGTTAGGAAAT 2588 ||| | || ||| || || ||||| ||||||||||| ||| || | | ||||||| Sbjct 678492 TTTGAGATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTTGAGA-AACTGAGGAAAT 678434 Query 2589 AATTTTTGGCATATATTTTAAATA 2612 | |||||| || |||| |||||| Sbjct 678433 AGTTTTTGCTATTTATTCTAAATA 678410 Score = 84.2 bits (92), Expect = 4e-13 Identities = 315/488 (65%), Gaps = 12/488 (2%) Strand=Plus/Minus Query 2125 ATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATAT 2184 ||| ||| | | ||||||| |||||| ||| | ||| ||| | |||| ||||| ||| Sbjct 695383 ATTGGAATTGAGATTATGAGATTGTAGAATGAAACTCTTCGGGTCATTCTATTTTATTAT 695324 Query 2185 ATTGAGGGCCTCGGATTTATTGCCT--GAATTGAGTGCTTCGGCATATGCGTCGTTGGCA 2242 | | | | | || | | | | ||||| | ||||| || ||| | | || | Sbjct 695323 TTGTAATG--TTGCATCTCTAGACCAAGAATTAATCGCTTCAGCGTATACATA--TGCAA 695268 Query 2243 --GATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGA 2300 | ||||| || || ||||| ||||| ||| |||| ||| | || |||| | | Sbjct 695267 TTGTTTGCTTACATCTCCTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGT 695208 Query 2301 AGTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCTGAATGT 2360 | ||||| || || || | ||| | || ||||| | | ||||| | |||| | Sbjct 695207 ACTCTCCCTCCTTTTCAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACAT 695148 Query 2361 TCGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTAC 2420 | | |||||| | | | |||| ||| | | |||||| |||| ||| || | Sbjct 695147 TTGTATGGAATTAGATAGTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGG 695088 Query 2421 ATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGA 2480 | | |||| | | ||| |||| ||| | || || ||||||||| || ||| | Sbjct 695087 AACAGAATTTCCTTGTGAACTGGAGAAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTA 695028 Query 2481 GTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGG 2540 ||| ||| || ||| ||| ||||| ||||||| ||| | ||| |||| | || Sbjct 695027 GTTTTCTACA--CTT--ATGAATTTTATATTTGTAGGGTAGTTGAGGATTTTGAGATGAT 694972 Query 2541 AAAGTGCTTCCTCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTTTTGGCAT 2600 ||| | || ||| | ||||||||||| | || | || |||||||| |||||| || Sbjct 694971 GAAGACCATCATCTATTGAGAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTAT 694912 Query 2601 ATATTTTA 2608 |||| || Sbjct 694911 TTATTCTA 694904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8786871496020