Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004044.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq519 96.9 6e-17 >seq519 Length=3254320 Score = 96.9 bits (106), Expect = 6e-17 Identities = 242/364 (66%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 2220 ACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2279 || ||| ||||| ||||||||||| || || ||| | | ||| | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2280 TTTTTCCATGTAGGATTTGACAT---CTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2336 ||||| ||||| ||||| |||| ||||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2337 GAAATGTGCTGACCTGTGTGGG-GATGTGAGATCGAAGAATCTTTGATTCTTACACTGGA 2395 ||| || | |||| ||| ||| | | || || |||| |||||| | || || Sbjct 1743255 GAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGA 1743313 Query 2396 ACTTTCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCTC 2455 | || ||| ||| ||||| || |||||||| || || ||| | ||||| |||| Sbjct 1743314 ATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTT 1743373 Query 2456 TACAGATTCTGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTG 2515 | || | ||| || ||| | |||| ||| | ||| |||| | || ||| | Sbjct 1743374 TGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAG 1743433 Query 2516 CCTCTTCCTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTC 2575 | || || || ||||| || || ||| | |||||||||| ||||||| |||||||| Sbjct 1743434 CATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTC 1743493 Query 2576 TGAA 2579 | || Sbjct 1743494 TAAA 1743497 Score = 78.8 bits (86), Expect = 2e-11 Identities = 125/176 (71%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 1291 TTTCCTCAGGTTGTAGTTGAATTGGACTTGTATTGTGATTATGTCGTGGTTCCTCAGAAA 1350 |||||| || ||||||||||| || | || ||| || ||||||||||| | ||| Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1351 TGGTCTCTCGTGGTGTTTGGTTATCTTGAAATACAGGGGATTTTTGACCGTCCA--GATA 1408 | ||||| |||| | |||||||||||||| |||| |||| | ||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1409 TACACGCCATTCTCTGATTGAGCTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCAT 1464 |||| ||||| | | ||||| |||||| ||||||| ||| | ||||||| Sbjct 1741996 TACA--CCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8639686227600