Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004090.1 Length=2768 Score E Sequences producing significant alignments: (Bits) Value seq3069 141 2e-30 seq519 118 2e-23 seq2957 113 8e-22 seq1694 111 3e-21 seq1129 80.6 5e-12 >seq3069 Length=10854949 Score = 141 bits (156), Expect = 2e-30 Identities = 264/385 (69%), Gaps = 2/385 (1%) Strand=Plus/Plus Query 1176 ATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTA 1235 || ||||| || | |||||| || || | | ||||||||||| || |||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1236 AATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATTAGA 1295 | | | | ||| | ||||| |||| ||| |||||||||| ||| | || Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATC 3754383 Query 1296 AAACACTGGTGTATTCCCAATGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTT 1355 | || || | | ||| |||||||| |||||| |||||||||||| |||||| | Sbjct 3754384 CATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT 3754443 Query 1356 ATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGG 1415 ||||||||||||| | |||| ||||||||| ||||| |||| ||||||||||||| Sbjct 3754444 ATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGG 3754503 Query 1416 GGATTTTTGATCGTC-CAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTC 1474 ||| ||| | | || || |||| ||| || | | ||| | || | |||||| || Sbjct 3754504 GGA-TTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTT 3754562 Query 1475 CCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACG 1534 ||| |||||||||| ||| || |||| ||| | |||||||| ||| || || Sbjct 3754563 CCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATT 3754622 Query 1535 TTAGATCAACTCTCCGTCTCCGAAT 1559 || || ||| | | ||||| ||| Sbjct 3754623 ATATATAAACACGCTTTCTCCTAAT 3754647 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 249/365 (68%), Gaps = 10/365 (3%) Strand=Plus/Plus Query 2251 ACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2310 || ||| ||||| ||||||||||| ||||| ||| | | ||| | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2311 TTTTTCCATGTATGCTTTAACATCTG---TTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2367 ||||| ||||||| |||||||| | |||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2368 GAAATGTGCTGACCTACTTGGG-GAGGTGAGATCGAAGAATCTTTGATTCTTGCATTGGA 2426 ||| || | || | ||| || | | || || |||| |||||| |||| || Sbjct 1743255 GAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAACAGA 1743313 Query 2427 ATTTTCCTTCGAACTGGATGAGAACATGCAGGTGTGGAGTCCCATCTTCATGTAGCTCTC 2486 |||| ||| ||| ||||| || ||||||| ||||| ||| | ||||| ||| Sbjct 1743314 ATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTT 1743373 Query 2487 TGCAGATTCTGATGAATAGTTTATTTGTAGGTGTTTCTAGGGCTTTTAAT-TGGGAAAGT 2545 |||| | ||| |||||| | ||||||||| || | ||||||| | || ||| Sbjct 1743374 TGCACACTCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGA 1743432 Query 2546 GCTTCCTCTTTTGTGAGTGAGCAGTGAGGGTATGTTAGGAAATAATTTTTTGCATTTATT 2605 || || ||||||||||| || || ||| | || ||||||| |||||| ||||||| Sbjct 1743433 GCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Query 2606 CTGAA 2610 || || Sbjct 1743493 CTAAA 1743497 Score = 107 bits (118), Expect = 3e-20 Identities = 129/174 (74%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1319 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1378 |||||| || |||| |||||| ||||| ||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1379 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATA 1438 | ||||| |||| |||||||||||||| |||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1439 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1492 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 105 bits (116), Expect = 1e-19 Identities = 246/365 (67%), Gaps = 11/365 (3%) Strand=Plus/Plus Query 2251 ACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2310 || ||| ||| | ||||||||||| ||||| ||| | | ||| | |||||| || Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTC 1749012 Query 2311 TTTTTCCATGTATGCTTTAA--CATC---TGTTGAGCTTTTAGCTCCCTGAATGTTCGGA 2365 ||||| ||||||| ||||| |||| ||||| |||||| |||| || ||| Sbjct 1749013 CTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATATTGAACATTTGGA 1749069 Query 2366 TGGAAATGTGCTGACCTACTTGGGGAGGTGAGATCGAAGAATCTTTGATTCTTGCATTGG 2425 ||||| || | ||| | ||| || | ||||| || | |||||| |||| | Sbjct 1749070 TGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCATTGATTGGTGCAGCAG 1749128 Query 2426 AATTTTCCTTCGAACTGGATGAGAACATGCAGGTGTGGAGTCCCATCTTCATGTAGCTCT 2485 ||||| ||| ||||| || || ||||||| ||||| |||| | ||||| ||| Sbjct 1749129 AATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCT 1749186 Query 2486 CTGCAGATTCTGATGAATAGTTTATTTGTAGGTGTTTCTAGGGCTTTTAATTGGGAAAGT 2545 ||||| | | | |||||| ||||||||| | ||| ||| | || ||| Sbjct 1749187 CTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGA 1749246 Query 2546 GCTTCCTCTTTTGTGAGTGAGCAGTGAGGGTATGTTAGGAAATAATTTTTTGCATTTATT 2605 | || |||||||||||| | || ||| | || || ||||||||||| ||||||| Sbjct 1749247 ACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Query 2606 CTGAA 2610 || || Sbjct 1749307 CTAAA 1749311 Score = 77.0 bits (84), Expect = 6e-11 Identities = 176/262 (67%), Gaps = 10/262 (4%) Strand=Plus/Plus Query 1631 AATTCTGCATTCTTTAATGCCCAATCTTTTAAAGCTGAATTTTTATCCTCATTCAAGTAC 1690 ||||| ||||| | || ||||| || | |||| ||||| || | || | | | Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1691 TCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTA 1750 |||||||| |||| | | ||| ||| | | ||| | |||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1751 ATTTGAACTGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATAAAT 1810 |||| ||| | |||| |||| || |||||||| || |||| |||| || ||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1811 TCTTTAAAGTGCT--TTAGAT-----AG--TGCGGG-TCTACGTCATCAATGACGTTATA 1860 ||||| | |||| || || || || ||| |||| ||||||||||| ||||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Query 1861 CCAAGCATCATTACTGTATACT 1882 |||||||| | | ||||| Sbjct 1742492 TGTTGCATCATTGCAGAATACT 1742513 >seq2957 Length=4215098 Score = 113 bits (124), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1314 AATGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTG 1373 || |||||| | ||||||| |||||| ||||| ||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1374 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCC-A 1432 ||||||| |||| ||||| |||||||||||||| || || ||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGA-TTTGGTACTTCCTA 1238867 Query 1433 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1492 |||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1493 GATTTGCACAATCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1542 || | | | ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1329 TTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCG 1388 |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1389 TGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTC 1448 | ||| |||||||||||||| || ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1449 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1492 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 100 bits (110), Expect = 5e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1317 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTG 1376 |||||||| | || || |||||| | ||| | |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1377 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTT 1421 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1319 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1378 |||| | | ||||| |||||| |||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1379 TGGTCTC 1385 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8745273051210