Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004091.1 Length=2749 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 seq1129 82.4 1e-12 seq3069 77.0 6e-11 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 238/358 (66%), Gaps = 4/358 (1%) Strand=Plus/Plus Query 2224 CCTCTTGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGGGTGTCTCCGTCCTTA 2283 || || ||||||| ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2284 TCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2343 ||||| || || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2344 GCTGACCTGGTTGGG-GAGACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTTCC 2402 | ||| | ||| || | | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2403 CTCGAACTGGATAAGCACGTGGATATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGAT 2462 ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2463 TTTGATGTATTTTTTGTTGGTTGGGGTTTCTAGGTTTTGAAGTTGGGAGAGTGCTTCCTC 2522 | | ||| ||||| || || ||| | ||| ||| || || || || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2523 TTTAGTTAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTAGCT-TGTATTTTAAA 2579 ||| || || || || ||| |||||||||||| |||||| ||| | |||| |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTT-GCTATTTATTCTAAA 1743497 >seq1129 Length=1508174 Score = 82.4 bits (90), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 9/213 (4%) Strand=Plus/Minus Query 1645 TCTTCGTCTAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCATAGGAAGATTGTT 1704 |||| |||| ||| |||||||||| | | |||||||| || | ||||||| | Sbjct 679409 TCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGAT 679350 Query 1705 GGGATACCACCTTTAATTTGAACTGGCTTCCCATACTTTGTATTGGATTGCCAGTCCCTT 1764 |||| |||||||||| |||| || ||||||||||| ||| |||||| | | || Sbjct 679349 GGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTT 679291 Query 1765 TGGGCCCCCATGAATTCCTTAAAGTGC-------TTTAGATAGTGGGGGTCGACGTCATC 1817 | | |||| || || || || | ||| || || |||||| || || ||||| Sbjct 679290 TTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGT-TACATCATC 679232 Query 1818 AATGACGTTATACCAAGCATCATTGCTGTATAC 1850 ||||| ||||| ||||||||| | |||| Sbjct 679231 TATGACATTATATGTTGCATCATTGTGGAATAC 679199 >seq3069 Length=10854949 Score = 77.0 bits (84), Expect = 6e-11 Identities = 132/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 1285 CAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGGAGTGTTATTACGTCGTGGTTCGT 1344 ||| |||||||| |||||| |||||||||| | |||| ||| | |||||||| ||| Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGT-CGT 3754459 Query 1345 TGAGAACGG----CCTCTGGTCGTGCTGGGTGATTTTGAAATATAGGGGATTTCTGACCG 1400 || || | |||||||| || || | | |||||||||||||||||| || Sbjct 3754460 TGTTAAATGGTCTCCTCTGGT-GTCATG--TTAACTTGAAATATAGGGGATTTGGTACTT 3754516 Query 1401 TCCAGATATACACGCCATTCTCTGC-TTGAGCTGCAGTGATGGGTTCCCCGGTGCGAAAA 1459 || ||||| ||| |||| | ||| | ||| | ||||| || ||| ||||||||| Sbjct 3754517 CTCAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAA 3754575 Query 1460 TCCAT 1464 | ||| Sbjct 3754576 TACAT 3754580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8687684484420