Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004101.1 Length=2613 Score E Sequences producing significant alignments: (Bits) Value seq1129 149 1e-32 seq1694 114 2e-22 seq519 114 2e-22 >seq1129 Length=1508174 Score = 149 bits (164), Expect = 1e-32 Identities = 247/350 (71%), Gaps = 10/350 (3%) Strand=Plus/Minus Query 1522 CATTTTCCTCTTTGTTGAGGAAAGCTATATAGCTGCTACCTTCCCCTGGATTGCACAGCA 1581 ||||||||||||| | |||||| || |||||| |||||| |||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1582 CGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCC 1641 ||||||||| | ||||||||| |||| || || || || || || || |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1642 AGTCTTTTTGGGCCCCAATAAGCTCTTTCCAGTGTTTCATCTTTAGATATTGGGGCGTGA 1701 | ||||||| | ||||||| | |||||| | || |||||||||| || ||| || | Sbjct 679297 AATCTTTTT-GCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1702 TATCATCAATGACGTTATA--CTCCA-CATAGTTTGAATAGACCTTTGCATTGAAATCAA 1758 |||||| ||||| ||||| | || ||| | | ||||| |||| |||||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTG-TGGAATACTGATTTG--TTGAAATCTA 679182 Query 1759 ---GATGACCGCTCAAATAATTATGTGGGCCTAGTGCACGTGCCCACATTGTCTTGCCGC 1815 |||| ||| | | |||||||| || | |||| || ||| | | || ||||| Sbjct 679181 AGTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTA 679122 Query 1816 ATCGCGAATCACCCTCAATGACAATACTAATCGGTCTATCTGGCCGCGCA 1865 ||| || ||||||| ||||| | ||||||||||||| |||| Sbjct 679121 TTCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCA 679072 >seq1694 Length=789422 Score = 114 bits (126), Expect = 2e-22 Identities = 183/261 (70%), Gaps = 4/261 (2%) Strand=Plus/Minus Query 1522 CATTTTCCTCTTTGTTGAGGAAAGCTATATAGCTGCTACCTTCCCCTGGATTGCACAGCA 1581 |||||||||||| | ||||| || ||||| |||||| |||||||| |||| | Sbjct 599835 CATTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATA 599776 Query 1582 CGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTTGGACTGCC 1641 ||||||||| || | | |||||||||||| | || || || || || | |||| Sbjct 599775 CGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCC 599716 Query 1642 AGTCTTTTTGGGCCCCAATAAGCTCTTTCCAGTGTTTCATCTTTAGATATTGGGGCGTGA 1701 | |||||||| ||||||||| |||||| | || |||||||||| || ||| | Sbjct 599715 AATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG 599656 Query 1702 TATCATCAATGACGTTATACTCCACATAGT--TTGAATAGACCTTTGCATTGAAATCAAG 1759 |||||||||| | |||| ||| | | ||||| |||| ||||||||| Sbjct 599655 CATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTG--TTGAAATCATA 599598 Query 1760 ATGACCGCTCAAATAATTATG 1780 |||||||| | |||||||| Sbjct 599597 GTGACCGCTTATGTAATTATG 599577 Score = 80.6 bits (88), Expect = 4e-12 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 1522 CATTTTCCTCTTTGTTGAGGAAAGCTATATAGC-TGCTACCTTCCCCTGGATTGCACAGC 1580 ||||||||||||| | | |||| || | ||| ||| |||||| | | ||||||||| Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGC-ACCTTCACTTAGATTGCACAAT 596181 Query 1581 ACGATTGATGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTATTTACAGTT 1633 ||||||||||| || || |||||||||| ||| || || || || || || || Sbjct 596180 ACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 114 bits (126), Expect = 2e-22 Identities = 176/243 (72%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 1485 AATTGAGCATTTTTTAATGTCCACGCTCTTAATT-CTGCATTTTCCTCTTTGTTGAGGAA 1543 |||| |||||||| || |||| |||| | || |||||||||| || | ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1544 AGCTATATAGC-TGCTACCTTCCCCTGGATTGCACAGCACGATTGATGGTATCCCGCCTT 1602 | || ||||| ||| ||| || | | ||| ||||| ||||||||||| || || |||| Sbjct 1742311 ATCTTTATAGGATGC-ACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTT 1742369 Query 1603 TAATTTGAACTGGCTTTCCG-TATTTACAGTTGGACTGCCAGTCTTTTTGGGCCCCAATA 1661 |||||| ||| | |||||| | || || || ||||| |||||||| ||||||| Sbjct 1742370 TAATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATC 1742428 Query 1662 AGCTCTTTCCAGTG----TTTCATCTTTAGATATTGGGGCGTGATATCATCAATGACGTT 1717 | |||||||| || | |||||||| ||| ||| | | |||||||||||| || Sbjct 1742429 AATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATT 1742488 Query 1718 ATA 1720 ||| Sbjct 1742489 ATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8252500289252