Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004147.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq1694 78.8 2e-11 seq519 78.8 2e-11 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1318 TTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAATGGACGGTTG 1377 |||||||||||||||||||||| | || ||||| | || | ||||||| | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1378 TGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCAGATAAACACGCCATTC 1437 | |||| ||||||||||||||| || ||||| | | ||||| | | |||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1438 TCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT 1481 | ||| |||| |||||| ||||||| |||| ||||||| Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 127/177 (72%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1308 TTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTTTGATTATGTCTTCTTTCATTGTGAA 1367 |||||| || ||||||||||| ||||| |||| || || ||||| | || | | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1368 TGGACGGTTGTGGTGTTCTGTTATCTTGAAATACAGGGGATTTTGAATCTCCCA--GATA 1425 | | | | |||| | ||||||||||||||| |||| |||| | | ||||| |||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1426 AACACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCAT 1481 ||| ||||| | ||| ||||| ||||| ||||||| ||| | ||||||| Sbjct 1741996 TACA--CCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678084833056