Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004153.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq519 82.4 1e-12 >seq519 Length=3254320 Score = 82.4 bits (90), Expect = 1e-12 Identities = 331/510 (65%), Gaps = 20/510 (4%) Strand=Plus/Plus Query 2084 AAAATTCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAA-TCTTTGGGAGC 2142 ||||||| | | ||||| ||| |||||||| |||||| | ||| |||||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGT-C 1743056 Query 2143 TTTCTCCCTTAATATATTGAGGGCCGATGCTTTGGACCCCGAATTGATTGCCTCGGCATA 2202 ||||| ||| ||| | | | || || | |||| ||||| || || | | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTA 1743116 Query 2203 TGCGTCGTTTGCAG--ACTGGCA-ACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAAC 2259 | | || | || | | || || ||| ||||| ||||||||||| || || ||| | Sbjct 1743117 TACATC---TACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATC 1743173 Query 2260 TCCATGATCAAGCACGTCTCCGTCTTTGTCCATATAGGCTTTGACAT---CTGTTGAGCT 2316 | ||| | |||||| || || || || || | ||| |||| ||||| Sbjct 1743174 ATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGA--- 1743230 Query 2317 TTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGG-GATGTGAGATCGA 2375 ||||| |||| || ||||||| || | ||| | ||| ||| | | || | Sbjct 1743231 TTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAA 1743289 Query 2376 AGAATCTTTGGTTTTTACATTGGAATTTCCCTTCGAATTGGATGAGAACATGCAGGTGAG 2435 | |||| ||| || | || |||||| ||| ||| ||||| || ||||||| || | Sbjct 1743290 AAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTG 1743349 Query 2436 GAGTTCCATCTT--CGTGGAATTCTCTGCAGATGCGGATAAATAGTTTATTTACTGGGGT 2493 ||||| || ||| | |||| |||| | | || ||| | |||| ||| Sbjct 1743350 --GTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTA 1743407 Query 2494 TTCTAGGTTTTTAAGTTGGGAAAGTGCTTCTTCTTTAGTGAGAGAGCAGTGTGGATATGT 2553 | ||| |||| || || ||| || || ||||| ||||| || || ||| | || Sbjct 1743408 GTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGT 1743467 Query 2554 GAGGAAATAATTTTTGGCATTTATTCTGAA 2583 |||||||| ||||||| ||||||||| || Sbjct 1743468 GAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268