Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004192.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 seq3069 84.2 4e-13 seq2957 78.8 2e-11 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 225/339 (66%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 2093 AAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGT 2152 ||||| | | | ||||| | || |||||||||||||| | | | ||| |||||| Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2153 TTTTCCCTTATTATTGCTAATGCCGCTTCAGCCGAACCCGCATTTAAGGCCTCTGCTGCA 2212 || || |||||||| ||||| | || || | | ||| | || | | || | Sbjct 1743058 TTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAG-TGTA 1743116 Query 2213 G-CATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAAGCGACC 2271 |||| | || | || | || ||| | ||||||||||||||| || ||||| | | Sbjct 1743117 TACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATC 1743176 Query 2272 CCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAGC 2331 || || | ||| || || ||||| |||||||| || || |||| ||| | || |||| Sbjct 1743177 TCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGA 1743236 Query 2332 TCCCTGGAAATTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCT 2391 || | |||| | |||||||| ||| | ||||||||| | || ||| || Sbjct 1743237 AAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCA 1743296 Query 2392 TGGGTTTCTGAACTGGGATTTACCTTTGAATTGGATGAG 2430 | | || || | | |||||||| |||| ||||| || Sbjct 1743297 TTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAG 1743335 Score = 82.4 bits (90), Expect = 1e-12 Identities = 128/177 (72%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1304 TTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTTATGATGTCGTGGTTCATTAGGAA 1363 |||||| || |||| ||||| |||| |||| | ||||||||||||||| | || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1364 TGGCCGGTTGTGGTGCTCG-GTTATCTTGAAATACAGGGGATTTGTTATCTCCCA--GAT 1420 | | | | |||| ||| |||||||||||||| |||| ||||| || ||||| ||| Sbjct 1741936 TTGTCTCCTCTGGTT-TCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1421 AAACACGCCATTCTTGGCCTGAGCTGCAGTGATGGGTGCCCCTGTGCGTGAATCCAT 1477 | ||| ||||| ||| |||||| ||||| || |||| ||| | ||||||| Sbjct 1741995 ATACA--CCATTGTTGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 >seq3069 Length=10854949 Score = 84.2 bits (92), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Plus Query 1298 CAACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGTTATGATGTCGTGGT--TC 1355 ||| |||||||| |||||| ||||| |||| |||| |||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1356 ATTAGGAATGGCCGGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCC 1415 ||| ||||| | | ||||| |||| ||||||||| |||||||||| || || Sbjct 3754461 GTTA--AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1416 CAGATAAACACGCCATTCTTGGCCTGAGCTGCAGTGA 1452 || ||| | ||| |||| ||| || ||| | ||||| Sbjct 3754519 CAAATATATACGTCATTGTTGCACTAAGCCGTAGTGA 3754555 >seq2957 Length=4215098 Score = 78.8 bits (86), Expect = 2e-11 Identities = 127/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1299 AACGCTTTCCTCAGGTTGTGATTGAACTGTACTTGGACTGT-TATGATGTCGTGGTTCAT 1357 || |||||| | ||||||| |||||||||| |||| ||| |||||||| | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGA-TGTCTATGATGTTGAGTTTGTT 1238807 Query 1358 TAGGAATGGCCGGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCA 1417 ||||| | | ||||| |||||||||||||| || |||||| || ||| | Sbjct 1238808 GTTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTA 1238867 Query 1418 GATAAACACGCCATTCTTGGCCTGAGCTGCAGTGATGGGTGCCCCTGTGCGTGAATCCAT 1477 | || | || |||| ||| |||||| ||| ||| | | | | ||||| ||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 118/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 1314 TTGTGATTGAACTGTACTTGGACTGTTATGATGTCGTGGTTCATTAGGAATGGCCGGTTG 1373 |||| |||||||||| ||||| ||| ||||||||||| | |||||| | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1374 TGGTGCTCG-GTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATT 1432 | ||| ||| |||||||||||||| || |||||| || ||||| | | |||||||| Sbjct 596581 TAGTG-TCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1433 CTTGGCCTGAGCTGCAGTGATGGGTGCCCCTGTGCGTGAATCCAT 1477 ||| | |||| |||||| || |||| |||| ||||||| Sbjct 596522 GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8700484019572