Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004300.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq519 100 5e-18 seq1694 80.6 5e-12 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 205/298 (69%), Gaps = 10/298 (3%) Strand=Plus/Plus Query 2086 ATTGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAA 2145 ||| |||| | || || | | | |||||| | || |||||||||||||| | ||| ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2146 -TCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCAT--TT 2202 ||||| ||| ||| || | |||||| ||| ||||| || ||| ||||| || Sbjct 1748861 CTCTTT-GGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGG---TGCATAATT 1748916 Query 2203 AAG-GCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATC 2261 || || || || |||| | || | | | || ||| | ||||||||||||| Sbjct 1748917 AATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATC 1748976 Query 2262 GATCTGAAACTCACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGA--CA 2319 || ||||| ||| |||| || | || || | ||||| || ||||| || || | || Sbjct 1748977 AATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCA 1749036 Query 2320 TCGGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAGCTATTAGGGT 2377 || || | || ||||| || | |||||||||||||| ||| |||||||||| Sbjct 1749037 TCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT 1749094 Score = 98.7 bits (108), Expect = 2e-17 Identities = 236/352 (67%), Gaps = 4/352 (1%) Strand=Plus/Plus Query 2098 AAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAA-TCTTTAGGGAG 2156 ||||| | | | ||||| | || |||||||||||||| | | | ||| ||||| ||| Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTT-GGGTC 1743056 Query 2157 TTTTTCCCTAATTATTGCTAAAGCTGCTTCGGTTGAACCTGCATTTAAGGCCTCTGCTGC 2216 || || | |||||| ||| | || || |||| ||| | |||| || | || Sbjct 1743057 ATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGA-CCTAGAATTAATCGCTTTAGTGT 1743115 Query 2217 AG-CATCATTAGCTGTCTGTTGACCTCCTCGTGCAGATCTTCCATCGATCTGAAACTCAC 2275 | |||| | || | || | || ||| | |||||||||||||| || ||||| ||| Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2276 CCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCGGAGCTGGACTTAG 2335 | || || | ||| || | ||||| |||||||| || || |||| ||| | || |||| Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAG 1743235 Query 2336 CTCCCTGGAAGTTTGGATGGAATTGGGTGGAGCTATTAGGGTGAGTGACATCGAAATGTC 2395 || | ||| |||||||||| ||| || ||||||||| | || ||| || Sbjct 1743236 AAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATC 1743295 Query 2396 TGGGGTTTCGGAACTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATG 2447 | || | | | |||||||| |||| ||||| || |||| | ||| Sbjct 1743296 ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATG 1743347 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 2248 GCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACTGTCCTTCTCGATG 2307 ||||||||||||||||| ||||| |||||||| || | ||| || | ||||| || ||| Sbjct 599254 GCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCAATG 599195 Query 2308 TAGGACTTGACATCGGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAG 2367 || || || |||| ||| || || | ||| | ||||||||||||| | | Sbjct 599194 TATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATAGTT 599135 Query 2368 CTATTAGGGTGAGTGACATCGAAA 2391 || |||||||| | | |||||| Sbjct 599134 CTGTTAGGGTGTGGTATGTCGAAA 599111 Score = 80.6 bits (88), Expect = 5e-12 Identities = 159/232 (69%), Gaps = 14/232 (6%) Strand=Plus/Minus Query 1638 CCAATTCTTGAGTGCAGCATTTTTCTCTTCATCCAAGAACTCTTTATAACTTGAGTCAGG 1697 |||||||||||| || |||||| |||||||||| ||| |||||||| || || Sbjct 599852 CCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTATA---GGACGCACC 599796 Query 1698 T---CCTGGATTGCAGAGGAAGATTGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCC 1754 | |||||||| || | | ||||| | || | | |||||||||||| | ||||| Sbjct 599795 TTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCC 599736 Query 1755 GTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAATTCCTTAAAGTG------ 1808 || || || |||||| || ||||| |||| || ||||| || | || Sbjct 599735 ATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCAT 599676 Query 1809 CTTTAGGT-AGTGGGGGTCTACGTCATCAATTACGTTATACCAGGCATCATT 1859 ||||| || |||||| | || | |||||||| | |||| |||||||| Sbjct 599675 CTTTAAGTAAGTGGGAG-CTGCATCATCAATGTCATTATCTGGTGCATCATT 599625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724