Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004356.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq2957 140 6e-30 seq3069 134 2e-28 seq1129 125 1e-25 seq1694 123 4e-25 seq519 114 2e-22 >seq2957 Length=4215098 Score = 140 bits (154), Expect = 6e-30 Identities = 172/231 (74%), Gaps = 3/231 (1%) Strand=Plus/Plus Query 1287 AACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTG 1346 || |||||| | ||||||| |||||||||||| ||||| | |||||||| | ||||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1347 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCC-A 1405 ||||||| |||| ||||| ||||||||||||||| || ||||| | | ||| | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTT-GGTACTTCCTA 1238867 Query 1406 GGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 |||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1466 GATTTGCACAATTTATGCCGAAGTAGTAT-GAGCACCCACACGTTAGATCA 1515 || | | || ||| ||||| ||| | ||| |||||| |||||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq3069 Length=10854949 Score = 134 bits (148), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 1286 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGT 1345 ||| |||||||| |||||| |||||| ||||| ||||||| |||||||||||| | | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1346 GTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTC-C 1404 ||| ||||||||| ||||| |||| ||||||||| ||||||||| | | || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTT-GGTACTTCTC 3754519 Query 1405 AGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCA 1464 | |||| ||| || | | ||| | || | |||||| || ||| |||||||||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1465 TGATTTGCACAATTTATGCCGAAGTAGTATGAGCACCCACA 1505 | || ||||| ||| | |||||||| ||| ||||| Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq1129 Length=1508174 Score = 125 bits (138), Expect = 1e-25 Identities = 135/175 (77%), Gaps = 4/175 (2%) Strand=Plus/Minus Query 1292 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTGTTGAA 1351 |||||| | ||||| |||||||||||| ||||||| |||||||| ||| || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1352 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGT-CCAGGTAT 1410 |||||| ||||| | ||||||||| ||||| ||| ||| | | | | ||| |||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT--TAAACTTCCCAAGTAT 693658 Query 1411 ACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 | |||||| | | || | ||| ||| |||| ||| ||| || ||||||||||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCAT 693604 Score = 89.7 bits (98), Expect = 9e-15 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1292 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTGTTGAA 1351 |||| | | ||||| |||||||||||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1352 TGGTCTC 1358 ||||||| Sbjct 679697 TGGTCTC 679691 >seq1694 Length=789422 Score = 123 bits (136), Expect = 4e-25 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 1302 TTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTGTTGAATGGTCTCTCG 1361 |||| |||||||||||||||||||| ||| |||||||| ||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1362 TGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAGGTATACACGCCACTC 1421 | ||| ||||||||||||||||| ||||| | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1422 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATT--T 1479 | ||| ||| ||||||| |||||| |||| ||||||||| || ||||| | Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAAT 596462 Query 1480 ATGCCGAAGTAGTATGAGCACCCACA 1505 ||| | ||| |||| ||| ||||| Sbjct 596461 ATGTTG--GTAATATGTGCAACCACA 596438 Score = 109 bits (120), Expect = 1e-20 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1290 GCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTGTTG 1349 |||||||| | || || |||||||| ||| | ||||| |||||||||| | ||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1350 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTT 1394 ||||||||| ||||| |||||||||||||||||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 Score = 78.8 bits (86), Expect = 2e-11 Identities = 140/204 (69%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 1649 TCTTCCTCCAAGAATTCTTTATATGATGATGTTGGGCCTGGATTGCAAAGGAAGATAGTT 1708 ||||| ||| ||| |||||||| || | | |||||||| || | | ||| | | Sbjct 599827 TCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGAT 599768 Query 1709 GGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTT 1768 | ||| ||| ||||||||||| ||||||| |||||| | |||||||| || || Sbjct 599767 GAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTT 599708 Query 1769 TGGGCCCCCATGAATTCTTTAAAGTGC-------TTTAGATAGTGGGGGTCTACGTCATC 1821 || |||| || |||||||| | ||| || || |||||| | || | ||||| Sbjct 599707 TGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAG-CTGCATCATC 599649 Query 1822 AATGACGTTATACCAAGCATCATT 1845 |||| | |||| |||||||| Sbjct 599648 AATGTCATTATCTGGTGCATCATT 599625 >seq519 Length=3254320 Score = 114 bits (126), Expect = 2e-22 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 1292 TTTCCTCAGGTTGTGGTTGAACTGTATTTGGATCTGTATGATGTCGTGTTTGGTGTTGAA 1351 |||||| || |||| |||||| ||||| ||||| | |||||||||||| ||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1352 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATAGAGGGGATTTCTGATCGTCCAGGTATA 1411 | ||||| |||| ||||||||||||||||||| |||| | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1412 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTG 1471 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| || Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCC 1742054 Query 1472 CACAATTTATGCCGAAGTAGTATGAGCACCCACACGTTAGATCAA 1516 ||| || ||| ||| ||| ||| ||||| || ||||| Sbjct 1742055 TACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAA 1742099 Score = 107 bits (118), Expect = 3e-20 Identities = 249/369 (67%), Gaps = 6/369 (2%) Strand=Plus/Plus Query 2231 CCTCTTGCAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTG 2290 || || ||||||||||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2291 TCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2350 |||||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2351 GCTGACCTGGTTGGG-GATACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTCCC 2409 | ||| | ||| |||| | ||| || |||| | ||| ||||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2410 TTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGAT 2469 | ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2470 TTTGATATATTTTTTATTAGTTGGTGTCTCTAGGGCTTGT-AATTGGGAAAGTGCTTCTT 2528 | | || ||||| ||| || || || | ||||| | | || ||| || || | Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2529 CTTTGTTGAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCTTGTATTTTAAAAC 2588 |||| |||| || || ||| |||||||||||| ||||||| | |||| |||| | Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAACC 1743499 Query 2589 GTTTGGGAG 2597 ||||||| Sbjct 1743500 --TTGGGAG 1743506 Score = 77.0 bits (84), Expect = 6e-11 Identities = 244/371 (66%), Gaps = 7/371 (2%) Strand=Plus/Plus Query 2238 CAGATCTTCCGTCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTGTCGATGT 2297 |||||||||| || || ||||| || |||| || | |||||| ||||| || |||| Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2298 AGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGA 2355 | || || || || || | |||||||| |||| || |||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2356 CCTGGTTGGGGATACCAAGTCGAAGAATCTGTTATTCGTGCAGACGTATTTCCCTTCGAA 2415 || || ||| | | |||||| || | | ||| |||||| | |||||||| ||| Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2416 CTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTGAT 2475 || || | || || | ||| || |||| | ||| || |||||||| | ||| || Sbjct 1749143 CTAGAGATT-ACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2476 ATATTTTTTATTAGTTGGTGTCTCTAGGGCTTGTAATTGGGAAAGTGCTTCTTCTTTGTT 2535 |||| ||| || || | ||| || | || ||| | || ||||| | Sbjct 1749201 GAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2536 GAGAGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCTTGTATTTTAAA-ACGTTTGG 2594 ||| | || ||| ||||||| |||||||||||| | |||| |||| | ||| Sbjct 1749261 GAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATT 1749320 Query 2595 GAGGAGCCATT 2605 | ||||||||| Sbjct 1749321 G-GGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690884368208