Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004558.1 Length=2757 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 353/527 (67%), Gaps = 31/527 (6%) Strand=Plus/Plus Query 2085 ATTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTGTGAAATTGTAAAACAAAA 2144 ||| |||| | || || | | | ||||||||||| ||||| ||| |||||| || ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2145 -TCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCTGAGCT-TTGGACCCTGAATTGA 2202 |||||||| ||||||| ||| ||| | | || | || |||| | | |||| | Sbjct 1748861 CTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAA 1748918 Query 2203 TTGCCTCGGCATATGCGTCGTTGGCAG-ATTGGCA-ACCTCCTCTAGCTGATCGTCCATC 2260 | || || || ||| | || || | ||| | || ||| ||| | |||| |||||| Sbjct 1748919 TCGCTTCAGCGTATACATC--TGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATC 1748976 Query 2261 GACTTGGAAAACTCCATGATCAATGACGTCTCCGTCTTTTTCCATGTAGGATTTGAC--A 2318 | ||| ||| | | ||| | |||||| || ||||| ||||| ||||| || | Sbjct 1748977 AATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCA 1749036 Query 2319 TC---GCTTGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGG 2375 || | |||| ||||| |||| || |||||||| || | || | ||| Sbjct 1749037 TCAAAGGTTGAT---TTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGG 1749093 Query 2376 GATGTGAGGTCGAAGAATCTATTGTTTT-TGCATTGGAACTTTCCTTCGAACTGGATGAG 2434 ||| | |||||| || | |||| || |||| ||| || ||| ||||| || || Sbjct 1749094 TTTGT-ATGTCGAAAAACC-ATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GAT 1749150 Query 2435 CACATGCAAGTGAGGAGTCCCATCATCGTGAAGCTCTCTGCAAATTCTAATAAATTT--- 2491 |||||||| || || |||| | ||| || |||||||| | | | || ||||| Sbjct 1749151 TACATGCAAATGTGGT-TCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAG 1749209 Query 2492 -TTTGAAAGTGGGTGTTTGGAGATTTAATAATTGGGAAAGTGCCTCTTCTTTAGTTAGAG 2550 |||| | |||| ||| || ||| | || ||| | || ||||| || || Sbjct 1749210 ATTTGTA---GGGTAGTTG-AGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTA 1749265 Query 2551 AGCA-CTTGGGATAAGTGAGAAAATAATTTTTGGCATTTATTTTAAA 2596 | || ||||||| |||||||||||||||||||| ||||||| |||| Sbjct 1749266 AACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8713283554724