Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004569.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq519 161 2e-36 seq3069 111 3e-21 seq1694 91.5 3e-15 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 161 bits (178), Expect = 2e-36 Identities = 247/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Plus Query 2252 GCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACA 2311 ||||||| ||| || || ||||| ||| | || || ||| |||||| ||||| |||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2312 TAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCC 2371 || || || |||| || | ||||||| |||| ||| ||||||| || | Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2372 CTGCTTGGG-GATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAA 2430 ||| | ||| |||| | ||| || |||| ||||| ||| |||||| ||| || Sbjct 1743268 CTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAA 1743326 Query 2431 TTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGAT 2490 |||||||| ||||| | |||||||||||| || ||| |||||| |||| ||| | || Sbjct 1743327 GTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTAT 1743386 Query 2491 GTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGT 2550 | ||||| |||||| ||| | ||| |||| | || ||| || || ||||| || Sbjct 1743387 GAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGT 1743446 Query 2551 TAAGGAGCA-CTTAGGATATGTGAGGAAATAATTTTTGCAATTTATT 2596 | ||| || ||| ||| | |||||||||| |||||||| ||||||| Sbjct 1743447 GAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATT 1743492 Score = 129 bits (142), Expect = 1e-26 Identities = 269/392 (69%), Gaps = 8/392 (2%) Strand=Plus/Plus Query 2253 CAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACAT 2312 |||||| ||| || || ||||| ||| |||| || || |||||| ||||| || | | Sbjct 1748964 CAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGT 1749023 Query 2313 AAGACTTGAC--ATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGC 2370 | || || || ||| | | |||||||| |||| ||||||||||| || | Sbjct 1749024 ATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGT 1749083 Query 2371 CCTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAA 2430 || || ||| | | |||||| || | ||||| ||| |||||||||| || Sbjct 1749084 TCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAA 1749142 Query 2431 TTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGAT 2490 | || | ||||| | ||||||||||| | || ||| ||||||||||| ||||| || Sbjct 1749143 CTAGAGATT-ACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACACTTTTAT 1749200 Query 2491 GTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGT 2550 | |||| |||||| ||| | |||||||| | || ||| | || ||||| || Sbjct 1749201 GAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGT 1749260 Query 2551 TAAGGAGCA-CTTAGGATATGTGAGGAAATAATTTTTGCAATTTATTTGGAAGCGCTTAG 2609 | | || ||| ||| | ||||| ||||||||||||| ||||||| || ||| Sbjct 1749261 GAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTAT 1749319 Query 2610 GGGGAGCCATATGGTCAATGAGTACCGATTGA 2641 ||||||||| | |||| |||||||||| Sbjct 1749320 TGGGAGCCAT-TTTTCAAATGTTACCGATTGA 1749350 Score = 98.7 bits (108), Expect = 2e-17 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 1311 TTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAAT 1370 ||||||| |||| |||||| |||||| || |||||||||||||| | |||| Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1371 GGCCTCTGGCTGTGTTC-TGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAGATAAA 1429 | ||| ||| ||| |||||||||||||||||||| ||| || ||||| | | Sbjct 1741937 TGTCTC-CTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1430 AACGCCATTCTCTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTG 1488 || ||||| | ||| |||| | ||||| ||||||| ||| | ||||||| || Sbjct 1741996 TACACCATTGT-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTC 1742053 Query 1489 TTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTATACGCTTACGCCTT 1548 | ||||| | ||| |||| ||| ||| ||||||| || || || ||||| ||| Sbjct 1742054 CTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTTTTTCCTA 1742113 Query 1549 ATTG 1552 |||| Sbjct 1742114 ATTG 1742117 >seq3069 Length=10854949 Score = 111 bits (122), Expect = 3e-21 Identities = 271/406 (67%), Gaps = 20/406 (5%) Strand=Plus/Plus Query 1157 AACTGCTCTGATTACATTGTTAATTGAAATTACACCAATACTATCTAAATACTTAAGAAC 1216 ||||||| || ||||| || | ||| || ||||||| |||||||| ||| ||| Sbjct 3754254 AACTGCTAATATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAAC 3754313 Query 1217 TTGATGTCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTAATGTCGTCCAGATGCG 1276 ||| || | | | ||| || |||| ||| ||||||||||||||| Sbjct 3754314 ATGAAAAGCAAGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATC-- 3754371 Query 1277 GAAGTTGAGAAAA---CAT---TTGTGAATCCCCAATACCTTCCTGATGTTGTGGTTGAA 1330 |||| ||| ||| || |||| ||| | ||||||| |||| |||||| Sbjct 3754372 ----TTGAAAAATATCCATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAA 3754427 Query 1331 TCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAATGG---CCTCTGGCTGTGTTC 1387 | |||||| || ||||||||||||| | |||||| |||||| |||| Sbjct 3754428 TTGTATCTGGATCTCTATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTG---GTGTCA 3754484 Query 1388 TGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGC-CT 1446 ||||| ||||||||| |||||||| || || || ||| | ||| |||| | ||| || Sbjct 3754485 TGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATACGTCATTGT-TGCACT 3754543 Query 1447 GAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTTGCAGTTGAGGTGGAGG 1506 || | ||||| || ||| ||||| ||| ||| || ||||| || | || || Sbjct 3754544 AAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGG 3754603 Query 1507 TAGTATGAGCAGCCACAGTCTAGGTCTATACGCTTACGCCTTATTG 1552 ||||||| ||| ||||| | || | | |||||| | ||| |||| Sbjct 3754604 TAGTATGTGCAACCACATTATATATAAACACGCTTTCTCCTAATTG 3754649 >seq1694 Length=789422 Score = 91.5 bits (100), Expect = 3e-15 Identities = 232/349 (66%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 2252 GCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACA 2311 ||||||| ||| ||||| ||||| |||||||| || ||| |||||| ||||| || | Sbjct 599254 GCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCAATG 599195 Query 2312 TAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCC 2371 || || || |||| || ||||| | ||||| |||||||||| || | Sbjct 599194 TATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATAGTT 599135 Query 2372 CTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAAT 2431 ||| | ||| | | |||||| || | |||| || |||||| ||| ||| Sbjct 599134 CTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTGAAT 599076 Query 2432 TGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATG 2491 | || ||| || || | |||||||||||| || || | ||||| ||| ||| | ||| Sbjct 599075 TAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTTATG 599016 Query 2492 TATTTTTTATTTGTTGGGGTTTCTAGGTTTTTT-AACTGGGAAAGTGCTTCTTCTTTCGT 2550 |||| |||| | | | | |||||||| || || ||| | || |||| | Sbjct 599015 AATTTGAGATTTATAGCGTAGTTGGGGTTTTTTGAAATGATGAAGAACATCATCTT---T 598959 Query 2551 TAAG---GAGCACTTAGGATATGTGAGGAAATAATTTTTGCAATTTATT 2596 |||| ||||| | || | ||| ||||||| ||| || ||||||| Sbjct 598958 TAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTATT 598910 Score = 82.4 bits (90), Expect = 1e-12 Identities = 145/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 2389 GTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAATTGGATAAGCACATGGAG 2448 |||||| || ||||| ||| | |||||||||| || |||| ||| || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2449 ATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGG 2508 |||||||||||| | ||| ||||||||||| || | ||| |||| |||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2509 GGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGTTAAGGAGCA-CTTAGGAT 2567 | |||||||| | || ||| | || ||||| | | || || ||| ||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2568 ATGTGAGGAAATAATTTTTGCAATTTATT 2596 | ||||||||||| |||| || ||||||| Sbjct 588069 A-GTGAGGAAATAGTTTTAGCTATTTATT 588042 Score = 78.8 bits (86), Expect = 2e-11 Identities = 151/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 1309 CCTTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAA 1368 ||| | |||| |||| |||||| ||| || || || ||||||||||| | | Sbjct 596652 CCTACTTGATATTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGA 596593 Query 1369 ATGG---CCTCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAGA 1425 |||| ||||| | ||| |||||||||||||||||| |||| || ||||| Sbjct 596592 ATGGTGTCCTCTAG---TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAG 596536 Query 1426 TAAAAACGCCATTCTCTGC-CTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATG 1484 | | |||||||| | ||| | ||| |||||| ||||||| |||| ||||||| Sbjct 596535 CATATACGCCATTGT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATC 596477 Query 1485 ATTGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACA 1523 || |||| || | || |||| |||| ||| ||||| Sbjct 596476 GTTCCTGCAATTAATATGTTGGTAATATGTGCAACCACA 596438 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 228/346 (66%), Gaps = 6/346 (2%) Strand=Plus/Minus Query 2252 GCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACA 2311 ||||||| | || || | ||| ||||| || || ||| ||||| ||||| || | Sbjct 695247 GCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTTCAATG 695188 Query 2312 TAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCC 2371 || || || ||||| || ||||||| |||| |||| |||||| | | Sbjct 695187 TACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTAGATAGTT 695128 Query 2372 CTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTT-TGGCACTTGAATTTCCCTTCAAA 2430 || | ||| | | |||||| || | ||||| ||| || |||||||| | || Sbjct 695127 TTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAACA-GAATTTCCTTGTGAA 695069 Query 2431 TTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGAT 2490 |||| ||| | || || ||||||||| || ||| |||| ||| || ||| || Sbjct 695068 CTGGAGAAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTAGTTTTCTACA--CTT--AT 695013 Query 2491 GTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGT 2550 | ||||| ||||||| ||| | ||| |||| | || ||| | || ||| | | Sbjct 695012 GAATTTTATATTTGTAGGGTAGTTGAGGATTTTGAGATGATGAAGACCATCATCTATTGA 694953 Query 2551 TAAGGAGCACTTAGGATATGTGAGGAAATAATTTTTGCAATTTATT 2596 | || || |||| | ||||||||||| ||||||| ||||||| Sbjct 694952 GAGAGAACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTATTTATT 694907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8790071376390