Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004580.1 Length=2630 Score E Sequences producing significant alignments: (Bits) Value seq1694 174 3e-40 seq1129 158 2e-35 seq519 154 2e-34 >seq1694 Length=789422 Score = 174 bits (192), Expect = 3e-40 Identities = 212/289 (73%), Gaps = 0/289 (0%) Strand=Plus/Minus Query 1479 CATTCTTGAGAGTCCAATGTTTGAGCGACGCATTTTCCGCTTTATCCAGGAAATCTTTAT 1538 |||| | ||| ||||||| ||||| | | |||||||| ||| |||| |||||||||||| Sbjct 599865 CATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTAT 599806 Query 1539 AGCTGGATCCCTCGCCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAA 1598 || | || || |||||||| || | |||||||| | ||| | | ||||||||||| Sbjct 599805 AGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGAA 599746 Query 1599 CTGGTTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGAAGCTCTTTCC 1658 | ||||||| |||||||||| ||||| |||||||| |||||| || |||||| Sbjct 599745 CAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTCT 599686 Query 1659 AATGCTTTAGCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTTATAGGCAACATTAT 1718 | ||||| | ||||| ||| || ||| | ||||||||| | |||| | ||| || Sbjct 599685 ATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCAT 599626 Query 1719 TCGAGTACACTCGATTATTGAAGTCCAGGTGTCCACTGAGGTAATTATG 1767 || || | ||| || ||||| || ||| || || | ||||||||| Sbjct 599625 TCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 109 bits (120), Expect = 9e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1486 GAGAGTCCAATGTTTGAGCGACGCATTTTCCGCTTTATCCAGGAAATCTTTATAGCTGGA 1545 ||| | ||||| || || | | |||||||| ||||||||| ||||||| | ||| | Sbjct 596262 GAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGC 596203 Query 1546 TCCCTCGCCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAACTGGTTT 1605 || || | | ||||||| | |||||||| ||||| || |||||||||| ||| ||||| Sbjct 596202 ACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTT 596143 Query 1606 CCCGTACTTGCAATT 1620 ||| ||||||||||| Sbjct 596142 CCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 158 bits (174), Expect = 2e-35 Identities = 173/229 (76%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 1479 CATTCTTGAGAGTCCAATGTTTGAGCGACGCATTTTCCGCTTTATCCAGGAAATCTTTAT 1538 |||| | ||| ||| ||| ||||| | |||||||| ||||||| ||||||||||||| Sbjct 679447 CATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTAT 679388 Query 1539 AGCTGGATCCCTCGCCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAA 1598 ||| | || || |||||||| || | | |||||| |||| ||||||||| ||| Sbjct 679387 AGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAA 679328 Query 1599 CTGGTTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGAAGCTCTTTCC 1658 | |||||||| ||||||||||| ||||| ||||||| | |||||| | |||||| Sbjct 679327 CGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTCT 679269 Query 1659 AATGCTTTAGCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTTATA 1707 ||||||| | ||||| ||| || | ||| ||||| ||||| ||||| Sbjct 679268 AATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 154 bits (170), Expect = 2e-34 Identities = 192/263 (73%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 1491 TCCAATGTTTGAGCGACGCATTTTCCGCTTTATCCAGGAAATCTTTATAGCTGGATCCCT 1550 |||||| ||||| | |||||||| | ||||| ||||||||||||||| | |||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1551 CGCCTGGATTGCAAAGCACGATTGAAGGGATCCCTCCTTTAATTTGAACTGGTTTCCCGT 1610 | | | ||| ||| | |||||||| ||||| || |||||||||| ||| |||||| Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1611 ACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGAAGCTCTTTCCAATG----CTTT 1666 |||||||||| ||||| |||||||| |||||| | ||||||||||| || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1667 AGCTTTAGGTATTGCGGTGCTACGTCATCAATGACGTTATAGGCAACATTATTCGAGTAC 1726 | ||||| |||| || ||||| ||||||||||| ||||| | ||| ||| || | Sbjct 1742451 ATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATATGTTGCATCATTGCAGAAT 1742510 Query 1727 ACTCGATTATTGAAGTCCAGGTG 1749 ||| || ||||| || | ||| Sbjct 1742511 ACTGATTTGTTGAAATCTAAGTG 1742533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8306898313648