Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004582.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq3069 91.5 3e-15 seq519 87.8 3e-14 seq1694 82.4 1e-12 >seq3069 Length=10854949 Score = 91.5 bits (100), Expect = 3e-15 Identities = 192/281 (68%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 1222 AGTCGGAGGGTATAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAG 1281 ||||| ||| ||| ||||||||||| ||| || | ||| || | | || Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAA 3754403 Query 1282 AGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTCATTGTTATGATGTCCATGTTCGTCGT 1341 ||||||| |||||| |||||||||| ||| || ||||||||| || |||| || Sbjct 3754404 GGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCG-TGGTCGTTGT 3754462 Query 1342 GAA-TGGACGGTTGTCGTGGCTGAGGATTTTGAAATAAAGGGGATTTGGAACCTCCCAGA 1400 || ||| | | | ||| | | |||||||| ||||||||||| || || || | Sbjct 3754463 TAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAA 3754522 Query 1401 TAAAGACGCCATTCGTTG-AATGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCATG 1459 || | ||| |||| |||| | | ||| | ||||| || ||| |||||| ||| ||| Sbjct 3754523 TATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATT 3754581 Query 1460 GTTGTGGCAGTTGATACTTAGGTAATAGCTGCATCCACATT 1500 ||| | ||| || || | |||| || |||| ||||||| Sbjct 3754582 GTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATT 3754622 >seq519 Length=3254320 Score = 87.8 bits (96), Expect = 3e-14 Identities = 240/363 (66%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 2214 ACCTCCTCTTGCAGATCTTCCATCGATCTGAAATGTGCCCCAGTCGATGTAATCTCCGTC 2273 || ||| || |||||||||||||| || ||||| | || || | ||| ||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2274 CTTCTCGATGTAGGACTTAACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAA 2333 ||| |||||||| || ||||||| |||| | || |||| || | ||| ||||||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAA 1743257 Query 2334 TTGGGTGGAGGTATGAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGCTTT 2393 ||| ||| | | ||||||| | || ||| || | || || | | ||| Sbjct 1743258 TTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTT 1743317 Query 2394 ACCTTTGAATTGGATGAGTGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGC 2453 |||| |||| ||||| ||| |||| | ||| | ||| | |||| ||||| ||| Sbjct 1743318 ACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTT-TGC 1743376 Query 2454 A-ACCCTAATGAATAATTTGTCTGAAGGGCA--TGAAATGTTAGATAATATATCTAACAT 2510 | || || |||||| | | || |||| | ||| || || | || | ||| Sbjct 1743377 ACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2511 CTGTTCTTTTGGAATTGGGCATTTTGGGAAAGTAAGAAAAATATTTTTTGCATTTATGCA 2570 | ||||||| | | ||| |||||||||| || ||| |||||| |||||| | Sbjct 1743437 C--ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCT 1743494 Query 2571 AAA 2573 ||| Sbjct 1743495 AAA 1743497 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 2204 CTGTCTGTTGACCTCCTCTTGCAGATCTTCCATCGATCTGAAATGTGCCCCAGTCGATGT 2263 |||| || | || || || ||||||||||||||||| ||||| ||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2264 AATCTCCGTCCTTCTCGATGTAGGACTTAACATCAGAGCTGGACTTAGCTCCCTGGAAGT 2323 | ||||| ||||| || ||||| || ||||||| |||| || || | ||| | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2324 TTGGATGGAATTG 2336 ||||||||||||| Sbjct 599154 TTGGATGGAATTG 599142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671685065480