Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004583.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq2957 80.6 5e-12 >seq2957 Length=4215098 Score = 80.6 bits (88), Expect = 5e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 1285 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGGACGGTGATGATGTCTCTGTTCATT 1344 || |||||| | ||||||| |||||||||||||||| | ||||||| | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGT-TGAGTTTGTT 1238807 Query 1345 -AGGAATGCTCGATTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTTGAACCTCCCA 1403 ||||| || | ||||| ||||||||||||||| || ||||| | || ||| | Sbjct 1238808 GTTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTA 1238867 Query 1404 GATAAACACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCA 1462 | || | || |||| | ||| ||||| ||| ||| | | | | ||||| |||||| Sbjct 1238868 GGTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1463 TGGTT 1467 | ||| Sbjct 1238927 TTGTT 1238931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632