Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004607.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 114 2e-22 >seq519 Length=3254320 Score = 114 bits (126), Expect = 2e-22 Identities = 260/386 (67%), Gaps = 9/386 (2%) Strand=Plus/Plus Query 2206 TGCTGTCCTCCTCTTGCTGATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCC 2265 |||| | ||| || || ||||||||||| || ||||| || | || || | ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2266 CCGTCCTTGTCGATGTAGGCCTTGACATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGA 2325 || ||||| |||||||| | || |||| ||| ||||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2326 TGGAAATGTGCTGATCTGGTTGGG-GATACCAGGTCGAAGAATCTGTTATTCGTGCAGAC 2384 ||||| || | |||| | ||| |||| | ||| || |||| | ||| ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2385 GAATTTGCCCTCGAACTGGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTC 2444 |||||| || ||| ||||| || ||||| | ||| || ||| | ||||| || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2445 TCTGCAGATTTTGATGTATTTTTTATTCG-AGGGTGTGTTGATGGCTTGAATTTGGGAAA 2503 | |||| | | | ||| ||||| ||| | ||||| ||||| | || | || || Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGGGT-AGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2504 GTGCTTCCTCTTTAGTGAGTGAGCACTGTGGATAAGTGATGAAATAATTTTTGGCTTGTA 2563 | || || ||||| ||||| || || ||| |||||| ||||| ||||||| | || Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTA 1743490 Query 2564 CTTTAAAACGTTTGGGGGGAGCCATT 2589 | |||| | | |||||||||| Sbjct 1743491 TTCTAAACCTT-----GGGAGCCATT 1743511 Score = 104 bits (114), Expect = 4e-19 Identities = 249/369 (67%), Gaps = 7/369 (2%) Strand=Plus/Plus Query 2224 GATCTTCCATCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTGTCGATGTAG 2283 ||||||||||| || ||||| || |||| || | | ||| || ||||| || ||||| Sbjct 1748966 GATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTAT 1749025 Query 2284 GCCTTGA--CATCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATC 2341 | || | |||| || |||||||||| |||| || |||||||| || | || Sbjct 1749026 GATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTC 1749085 Query 2342 TGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCAGACGAATTTGCCCTCGAACT 2401 | || ||| | | |||||| || | | ||| |||||| |||||| || ||||| Sbjct 1749086 T-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACT 1749144 Query 2402 GGATGAGCACATGGAGATGAGGGCTCCCATCTTCGTGTAACTCTCTGCAGATTTTGATGT 2461 || || ||||| | ||| || |||| | ||||| |||||||| | ||| ||| Sbjct 1749145 AGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGA 1749202 Query 2462 ATTTTTTATTCG-AGGGTGTGTTGATGGCTTGAATTTGGGAAAGTGCTTCCTCTTTAGTG 2520 |||| ||| | ||||| ||||| | || | || ||| | || ||||| ||| Sbjct 1749203 ATTTAAGATTTGTAGGGT-AGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTG 1749261 Query 2521 AGTGAGCACTGTGGATAAGTGATGAAATAATTTTTGGCTTGTACTTTAAAACGTTTGGGG 2580 ||| | || ||| |||||| |||||||||||| | || | |||| || | Sbjct 1749262 AGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTG 1749321 Query 2581 GGAGCCATT 2589 ||||||||| Sbjct 1749322 GGAGCCATT 1749330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996