Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004608.1 Length=2745 Score E Sequences producing significant alignments: (Bits) Value seq1129 104 4e-19 >seq1129 Length=1508174 Score = 104 bits (114), Expect = 4e-19 Identities = 262/389 (67%), Gaps = 22/389 (6%) Strand=Plus/Minus Query 1733 AATTCCGCATTCTTTGAAGC--CCACTGTTTAAGCGCAGCATTGTTCTCTTCATCCAAGT 1790 ||||| ||||| ||| ||| | | | || || ||| |||| | ||||| ||| | | Sbjct 679454 AATTCTGCATT--TTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGA 679397 Query 1791 ACTCTTTATAGGAGG-ACTTGGGACCAGGGTTACACAGAAAGATGGTGGGGATACCACCT 1849 | ||||||||| | | || | ||| || ||||||| ||||| | |||| |||| Sbjct 679396 AATCTTTATAGCACGCACCTTC-ACCTGGATTACACAATAAGATTGATGGGAGGTAACCT 679338 Query 1850 TTAATTTTAGTGGGCTTCCCGTACTTGACGTTAGACTGCCAGTCTCTTTGCGCGCCCATG 1909 |||||| | ||| ||||| |||||| ||| ||||| ||| ||||| | || || Sbjct 679337 TTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTGCCC-CCAATC 679279 Query 1910 AATTCTTTGAAATGTTTCA------AATAATGTGGATCAACGTCATCGATGACGTTGTAC 1963 || ||||| |||| |||| | ||| ||| || ||||| ||||| || || Sbjct 679278 AAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATAT 679219 Query 1964 CATGCCTCGTTA--GAGTA-TGTTTTGTCGTTTAGATCCAA---ATGGCCGCAAAGATAA 2017 ||| || || || || || ||||| | | ||| || ||||||| || ||| Sbjct 679218 GTTGCATCATTGTGGAATACTGATTTGTTG---AAATCTAAGTGATGGCCGTTAATGTAA 679162 Query 2018 TTATGAGGACCTATGGCACGTGCCCACATGGTTTTACCCGTGCGACTATCTCCTTCAATA 2077 |||||| | | | | || ||| | | ||||| || | ||||| |||||||| Sbjct 679161 TTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATG 679102 Query 2078 ACTATACTAATAGGTCTATCTGGCCGCGC 2106 | |||||| ||||||||||||||| ||| Sbjct 679101 ATTATACTTTTAGGTCTATCTGGCCACGC 679073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8674884949268