Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004611.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq1694 82.4 1e-12 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 147/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 1295 TTGTGGTTGAACTGTATTTGAATCTTGATTATGTCGTGCTGTGTT-AGGAAGGGCCTGCT 1353 |||| ||||||||||||||| |||| || |||||||| | |||| ||| || | || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGT-TGTTGTTGAATGGTGTCCT 596583 Query 1354 GTCGTGTTTCAAAATTTTGAAATACAGGGGATTTCGAATTTCCCAGGTATATACGCCACT 1413 | |||| || |||||||| || ||||| | | |||||| | |||||||||| | Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1414 CTCTGC-TCGATCCGCAGTGATGTATTCCCCTGTGCGTGAATCCGT-GATCATGGCAGTT 1471 | ||| ||| || |||||| | |||||| |||| ||||| | | || | ||| || Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCT-GCAATT 596465 Query 1472 GATCGATATGTAATACGAACAACCACA 1498 || | |||||| | |||||||| Sbjct 596464 AATATGTTGGTAATATGTGCAACCACA 596438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655685646540