Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004613.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq519 107 3e-20 seq1129 86.0 1e-13 seq3069 78.8 2e-11 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 234/345 (68%), Gaps = 4/345 (1%) Strand=Plus/Plus Query 2229 TCCCCTTGCAGATCTTCCATCGATCTGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTT 2288 |||||| |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2289 CTCCAGATAGGACTTAACGTCTGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2348 || | || || ||||| | ||| ||||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2349 TGCTGACCTGGTTGGG-GACACCAGGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCC 2407 | ||| | ||| || | | ||| || |||| | ||| ||||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2408 CTTCGAACTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAA 2467 || ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2468 TTTTGATATATTTTTTATTTGTTGGGGTTTGTAGGGTTTGTAATTGGGAAAGTGCTTCTT 2527 | | || ||||| |||||| ||| | ||| ||| | || ||| || || | Sbjct 1743380 CTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCAT 1743439 Query 2528 CCTTTGTGAGTGAGCA-CTGGGGATATGTAAGAAAATAATTTTTG 2571 | |||||||| || || || |||| | || || |||| ||||||| Sbjct 1743440 CTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 Score = 96.9 bits (106), Expect = 6e-17 Identities = 331/501 (66%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 2078 GAGGTGCAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAA-TCT 2136 |||| || || || | | | ||||||||||| ||||||||| |||||| || || ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2137 TTGGGGGCTAATTCTTTAATTACAT-TAAGA--GCCTCTGACTTACTTCCGCTGTTAAGT 2193 ||||| || ||||| |||| | ||| || ||| ||| | | |||| Sbjct 1748865 TTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCT--CTTGGTGCATAA-TTAATC 1748920 Query 2194 GCTTTGGCGTAAGCGTCATTGGCTGTCTGTTGTCCTCCCCTTGCAGATCTTCCATCGATC 2253 |||| ||||| | || || | | | | |||||| ||||||||||||| || Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATT 1748980 Query 2254 TGAAACTCGCCCCAGTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTAA--CGTCTG 2311 ||||| || |||| || | |||||| ||||| || | || || |||| | || Sbjct 1748981 TGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAA 1749040 Query 2312 AGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGACACCA 2371 || |||||||||| |||| || |||||||| || | || || ||| | Sbjct 1749041 AGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCT-ATTAGGGTTTGTA 1749099 Query 2372 GGTCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGGATAAGCACGTGGA 2431 |||||| || | | ||| |||||| | |||||||| ||||| || | || || | Sbjct 1749100 TGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCA 1749158 Query 2432 GATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAAATTTTGATATATTTTTTATTTGTTG 2491 ||| || ||| | ||| || |||||||| | ||| || |||| |||||| | Sbjct 1749159 AATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAG 1749217 Query 2492 GGGTTTGTAGGGTTTGTAATTGGGAAAGTGCTTCTTCCTTTGTGAGTGAGCA-CTGGGGA 2550 || | ||| ||| | || ||| | || || ||||||||| | || || |||| Sbjct 1749218 GGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA 1749277 Query 2551 TATGTAAGAAAATAATTTTTG 2571 | || ||||||||||||||| Sbjct 1749278 -AAGTGAGAAAATAATTTTTG 1749297 Score = 80.6 bits (88), Expect = 5e-12 Identities = 119/168 (71%), Gaps = 12/168 (7%) Strand=Plus/Plus Query 1691 GATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTACTTTG 1750 ||| ||| | | ||||| |||||| ||||||||||||| | | | |||| |||| Sbjct 1742337 GATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGC 1742396 Query 1751 TGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAATTCTTTAAAGTG----------CTTT 1800 || |||||||||||| |||| |||| || |||||||| | || |||| Sbjct 1742397 AATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTT 1742456 Query 1801 AGATA-GTGGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1847 | || ||||| | |||| ||||||||||| || || ||||||||| Sbjct 1742457 AAGTATGTGGGAG-CTACATCATCAATGACATTATATGTTGCATCATT 1742503 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 9/168 (5%) Strand=Plus/Minus Query 1687 CCTGGATTGCAGAGGAAGATTGTTGGGATCCCACCTTTAATTTGCATGGGCTTCCCGTAC 1746 |||||||| || | ||||||| ||||| |||||||||| | | ||| ||||| ||| Sbjct 679373 CCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATAC 679314 Query 1747 TTTGTGTTGCTTTGCCAATCTCTTTGGGCCCCCATGAATTCTTTAAAGTGC-------TT 1799 || || |||||||||||| ||| | |||| || || ||||| | ||| || Sbjct 679313 TTGCAATTACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTT 679255 Query 1800 TAGATAGTGGGGGTCTACGTCATCAATGACGTTGTACCATGCATCATT 1847 || |||||| || ||| ||||| ||||| || || ||||||||| Sbjct 679254 AAGTAAGTGGGAGT-TACATCATCTATGACATTATATGTTGCATCATT 679208 >seq3069 Length=10854949 Score = 78.8 bits (86), Expect = 2e-11 Identities = 155/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 1288 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTTGGACTGTTATTATGTCGTGTTCCCG 1347 ||| |||||||| |||||| |||||| ||||| |||| ||| |||||||| || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1348 GAAGAATGGTCTC-TC-GATGTGCTTGGTTATCTTGAAATAGAGGGGATTTGGGACCGTC 1405 | ||||||||| || | ||| | |||| ||||||||| ||||||||||| || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCAT--GTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1406 CAGATATACGCGCCACTCTCTGC-TTGAGTTGCAGTGATGGGTTCCCCGGTGCGTGAATC 1464 || ||||| || || | | ||| | || | ||||| || ||| ||||| ||| Sbjct 3754519 CAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1465 CATGGTTGTGACAGTTGATGCTAATGAAGTATGAGCATCCACA 1507 ||| ||| | || || ||| | |||||| ||| ||||| Sbjct 3754578 CATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632