Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004626.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq3069 113 8e-22 seq1694 109 1e-20 seq1129 109 1e-20 seq2957 100 5e-18 seq519 98.7 2e-17 >seq3069 Length=10854949 Score = 113 bits (124), Expect = 8e-22 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1286 CAACGCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGT 1345 ||| |||||||| |||||| ||||| ||||| |||| ||||||||||| || | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1346 GTTGAATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCC 1404 ||| ||||| ||| ||||| | || ||| ||||||||||||||||||| | | | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATG-TTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1405 AGGTATATACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCA 1464 | |||||||| |||| | ||| | || | |||||| || ||| |||||||||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1465 T 1465 | Sbjct 3754580 T 3754580 >seq1694 Length=789422 Score = 109 bits (120), Expect = 1e-20 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1302 TTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGTGTTGAATGG---CCTC 1358 |||| |||||||||||| |||| ||| ||||||| |||| |||||||||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1359 TCGTGGTGCTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATATACGCCA 1418 | ||| | || ||||||||||||| || ||||| | | ||| | |||||||||| Sbjct 596581 TAGTGTCG--TG-TTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1419 TTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 || | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 91.5 bits (100), Expect = 3e-15 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1290 GCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGTGTTG 1349 |||||||| | || || ||||||| ||| |||| |||||||||| |||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1350 AATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGT 1408 ||||| ||| ||||| | || ||||||||||||| ||||||||| | | || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATG-TTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGT 600114 Query 1409 ATATACGCCATT 1420 ||||||| |||| Sbjct 600113 ATATACGTCATT 600102 >seq1129 Length=1508174 Score = 109 bits (120), Expect = 1e-20 Identities = 130/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1292 TTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGTGTTGAA 1351 |||||| | ||||| ||||||||||| |||| |||||||| || | || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1352 TGGCCTCTCGTGGTGCTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATA 1411 || ||| ||||| | |||||||| |||| ||||| ||| | | ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1412 TACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 ||||||||| | || | ||| ||| |||| ||| ||| || ||||||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCAT 693604 >seq2957 Length=4215098 Score = 100 bits (110), Expect = 5e-18 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 1287 AACGCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGTG 1346 || |||||| | ||||||| ||||||||||| ||| |||||||| | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1347 TTGAATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCCA 1405 ||||||| ||| ||||| | || ||||||||||||| || ||||| | | | | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATG-TTATCTTGAAATAGCGGAGATTTGGTACTTCCTA 1238867 Query 1406 GGTATATACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 ||||||||| |||| | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1466 GATTTGCACAATCTATGCCGAAGTAGTAT-GAACACCCGCACGTTAGATCAACTCTACGC 1524 || | | | ||| ||||| ||| | || || ||| |||||||| |||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA---CTACGC 1238984 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1292 TTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTTGTTGGTGTTGAA 1351 |||||| || |||| ||||| ||||| ||| ||||||||||| |||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1352 TGGCCT-CTCGTGGTGCTTGATTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTAT 1410 | | || ||| | | | || ||||||||||||| |||| |||| | | ||| | || Sbjct 1741936 TTGTCTCCTCTGGTTTCGTG-TTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1411 ATACGCCATTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1465 |||| ||||| | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741995 ATACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662085414116