Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004627.1 Length=2734 Score E Sequences producing significant alignments: (Bits) Value seq1129 113 8e-22 seq3069 107 3e-20 seq1694 104 4e-19 seq2957 100 5e-18 seq519 95.1 2e-16 >seq1129 Length=1508174 Score = 113 bits (124), Expect = 8e-22 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1295 TTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGTGTTGAA 1354 |||||| | ||||| ||||||||||| |||| |||||||| |||| || ||||||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1355 TGGCCTCTCGTGGTGCTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCCAGGTATA 1414 || ||| ||||| | |||||||| |||| |||||| ||| | | ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1415 TACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1468 ||||||| | | || | ||| ||| |||| ||| ||| || ||||||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGAGATATT-CCCGGTACGAAAATCCAT 693604 >seq3069 Length=10854949 Score = 107 bits (118), Expect = 3e-20 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1289 CAACGCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGT 1348 ||| |||||||| |||||| ||||| ||||| |||| |||||||||||||| | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1349 GTTGAATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCC 1407 ||| ||||| ||| ||||| | || ||| |||||||||| |||||||| | | | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATG-TTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1408 AGGTATATACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCA 1467 | |||||||| || | | ||| | || | |||||| || ||| |||||||||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1468 T 1468 | Sbjct 3754580 T 3754580 >seq1694 Length=789422 Score = 104 bits (114), Expect = 4e-19 Identities = 125/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1305 TTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGTGTTGAATGG---CCTC 1361 |||| |||||||||||| |||| ||| |||||||||||| |||||||||| |||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1362 TCGTGGTGCTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCCAGGTATATACGCCA 1421 | ||| | || ||||||||||||| | ||||| | | ||| | |||||||||| Sbjct 596581 TAGTGTCG--TG-TTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA 596525 Query 1422 CTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1468 | | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596524 TTGTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 87.8 bits (96), Expect = 3e-14 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 2234 CTAGCAGATCTTCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCG 2293 |||||||||||||| ||||| ||||| ||||||| || ||||| || || ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2294 ATGTAGGACTTGACATCGGAACTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGTGTG 2353 ||||| || || |||| || || || | ||| | ||||||||||||| | Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2354 GAGGTGTTGGGGTGTGTAATGTCGAA 2379 | |||| ||||||| |||||||| Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA 599112 Score = 87.8 bits (96), Expect = 3e-14 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 1293 GCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGTGTTG 1352 |||||||| | || || ||||||| ||| |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1353 AATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCCAGGT 1411 ||||| ||| ||||| | || ||||||||||||| |||||||| | | || || Sbjct 600172 AATGGTCTCCTCTGGTGTCATG-TTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGT 600114 Query 1412 ATATACGCCA 1421 ||||||| || Sbjct 600113 ATATACGTCA 600104 >seq2957 Length=4215098 Score = 100 bits (110), Expect = 5e-18 Identities = 169/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Plus Query 1290 AACGCTTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGTG 1349 || |||||| | ||||||| ||||||||||| ||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1350 TTGAATGGCCTCTCGTGGTG-CTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCCA 1408 ||||||| ||| ||||| | || ||||||||||||| || ||||| | | | | Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATG-TTATCTTGAAATAGCGGAGATTTGGTACTTCCTA 1238867 Query 1409 GGTATATACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1468 ||||||||| || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238868 GGTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1469 GATTTGCACAATCTATGCCGAAGTAGTAT-GAACACCCGCACGTTAGATCAACTCTACGC 1527 || | | | ||| ||||| ||| | || || ||| |||||||| |||||| Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA---CTACGC 1238984 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 210/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 2079 GAGGTGCAAAAATCCTATCTAAATTAGTATTTAAATTATGAAATTGAAAAAT-ATATTCT 2137 |||| || || || | | | ||||||| ||| ||||||||| |||| | ||| | | ||| Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2138 TTTGGAAGTTTTTCCCTAATTATTGCCATTGCTGCCTCTTTCGAACCTGCGT--TTAA-C 2194 || || ||| || | |||||| | |||||| ||| | | ||| | |||| | Sbjct 1748865 TTGGGTC-TTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGG---TGCATAATTAATC 1748920 Query 2195 GCTTCTGCAGCTGCATCGTTAGCCGTCTGTTGACCTCCTCTAGCAGATCTTCCGTCGATC 2254 ||||| || | |||| | | | | | || ||| ||| |||||||||| || || Sbjct 1748921 GCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATT 1748980 Query 2255 TGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGAC--ATCGG 2312 ||||| || |||| || || || || || ||||| || ||||| || || || ||| Sbjct 1748981 TGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAA 1749040 Query 2313 AACTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGTGTGGAGGTGTTGGGGTGTGTAA 2372 | | || ||||| || | |||||||||||||| ||| | || |||| ||| | Sbjct 1749041 AGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGTTTGT-A 1749099 Query 2373 TGTCGAA 2379 ||||||| Sbjct 1749100 TGTCGAA 1749106 Score = 93.3 bits (102), Expect = 7e-16 Identities = 128/175 (73%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 1295 TTTCCTCAGGTTGTGATTGAACTGTATTCTGATCGTTATGATGTCGTGGTTGGTGTTGAA 1354 |||||| || |||| ||||| ||||| ||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1355 TGGCCT-CTCGTGGTGCTTGATTATCTTGAAATATGGGGGATTTTTGATTGTCCAGGTAT 1413 | | || ||| | | | || ||||||||||||| ||| |||| | | ||| | || Sbjct 1741936 TTGTCTCCTCTGGTTTCGTG-TTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGAT 1741994 Query 1414 ATACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1468 |||| ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741995 ATACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 82.4 bits (90), Expect = 1e-12 Identities = 207/311 (67%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 2059 ACAAACAA-ATACCTCTAAAGGAGGTGCAAAAATCCTATCTAAATTAGTATTTAAATTAT 2117 |||||||| |||| | | || | || ||||| | | | ||||| | ||| ||||||| Sbjct 1742969 ACAAACAATATACTTGAATTTGAAGGGCGAAAATTCGACCCAAATTGGAATTGAAATTAT 1743028 Query 2118 GAAATTGAAAAAT-ATATTCTTTTGGAAGTTTTTCCCTAATTATTGCCATTGCTGCCTCT 2176 || |||| | | | | | ||||| || || | | | |||||| | || || ||| Sbjct 1743029 GATATTGTAGAGTGAAACTCTTTGGGTCATTCT-CTTTTATTATTTGTAATGTTGAATCT 1743087 Query 2177 TTCGAACCTGCGTTTAACGCTTCTGCAGCTGCATCGTTAGCCGTCTGTTGACCTCCTCTA 2236 | || | | || | ||||| | | |||| | | | || | || ||| ||| Sbjct 1743088 CTTGACCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCCCCTA 1743147 Query 2237 GCAGATCTTCCGTCGATCTGAAATACACCCCAGTCGACGTAATCACCGTCCTTCTCGATG 2296 ||||||||||| || || ||||| || | || || ||||| || || ||||| |||||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2297 TAGGACTTGACATCGGAACTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGTGTGGAG 2356 || || || |||| || | || |||| || | ||| |||||||||| ||| Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2357 GTGTTGGGGTG 2367 |||| ||||| Sbjct 1743268 CTGTTAGGGTG 1743278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8639686227600