Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_004634.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 247/362 (68%), Gaps = 16/362 (4%) Strand=Plus/Plus Query 2205 ACCTCCTCTAGCTGATCGTCCATCGACTTGGAAA--ATTCCATGATCAAGGATGTCTCCG 2262 || ||| ||||| |||| |||||| | ||| ||| || || ||| | | |||||| Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCA--ATCTACGTAGTCTCCC 1743195 Query 2263 TCTTTCTTAATGTAGGTTTTGACATC---GCTTGAGCTTTTAGCTCCCTGAATGTTTGGA 2319 || || | ||||| | ||| |||| | |||| ||||| |||| ||| || Sbjct 1743196 TCCTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGA 1743252 Query 2320 TGGAAATGTGCTGACCTGCTTGGG-GATGTGAGGTCAAAGAATCTGTTGTTTTG-GCATT 2377 ||||| || | ||| | ||| ||| | | |||||| |||| ||| || | ||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCA-TTGATTGGTGCAAC 1743310 Query 2378 TGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATTTTCATGAAGCT 2437 |||||| ||| ||| ||||| || |||||||| || || ||| || || || | Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2438 CTCTGCAGATTCTAATGAATTTTATGGAAGTGGGGGTTTGGAGATTTAAGAATTGGGAAA 2497 || |||| | ||| |||||||||| || ||| | ||| || || || || Sbjct 1743371 CTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2498 GTGCCTCTTCTTTAGTAAGGGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGCATTT 2556 | || || ||||| || ||||| ||| |||||| |||||||||||| ||||||| |||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2557 AT 2558 || Sbjct 1743490 AT 1743491 Score = 77.0 bits (84), Expect = 6e-11 Identities = 243/363 (67%), Gaps = 19/363 (5%) Strand=Plus/Plus Query 2205 ACCTCCTCTAGCTGATCGTCCATCGACTTGGAAA--ATTCCATGATCAAGGATGTCTCCG 2262 || ||| ||| | |||| |||||| | ||| ||| || ||| ||| | |||||| Sbjct 1748953 ACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCA--ATCTACATAGTCTCCC 1749010 Query 2263 TCTTTCTTAATGTAGGTTTTGAC--ATC---GCTTGAGCTTTTAGCTCCCTGAATGTTTG 2317 || || | |||||| | ||| || ||| | |||| |||||| |||| |||| Sbjct 1749011 TCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGA---TTTAGCATATTGAACATTTG 1749067 Query 2318 GATGGAAATGTGCTGACCTGCTTGGGGATGTGAGGTCAAAGAATCTGTTGTTTTG-GCAT 2376 ||||||| || | || | ||| ||| | ||| || || | ||| || | ||| Sbjct 1749068 GATGGAATTGAATGGTTCTATTAGGGTTTGT-ATGTCGAAAAACCA-TTGATTGGTGCAG 1749125 Query 2377 TTGAATTTTCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATTTTCATGAAGC 2436 |||||| ||| ||||| || || |||||||| || || |||| || || || Sbjct 1749126 CAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGT-TCCCGTTGCTGTGTAGT 1749183 Query 2437 TCTCTGCAGATTCTAATGAATTTTATGGAAGTGGGGGTTTGGAGATTTAAGAATTGGGAA 2496 |||||||| | | | |||||||| | || ||| | ||| ||| || || | Sbjct 1749184 TCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGA 1749243 Query 2497 AGTGCCTCTTCTTTAGTAAGGGAGCAT-TTGGGATAAGTGAGGAAATAATTTTTGGCATT 2555 || | || ||||| || || | ||| |||||| ||||||| |||||||||||| ||| Sbjct 1749244 AGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATT 1749302 Query 2556 TAT 2558 ||| Sbjct 1749303 TAT 1749305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8630086576236